| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1736968 = | 50 (1.010) | 3 (0.060) | 3/242 | NT | 6.2% | coding (672/1035 nt) | dapD | 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase |
| ? | NC_002947 | 1737010 = | 43 (0.920) | coding (630/1035 nt) | dapD | 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase | |||||
CGACTACGTGGTCCCGGCCGGCGTGCGTATCGCCGACACCGCCCGTGTGCGCCTGGGCGCCTACATTGGCGAAGGCACCACCATCATGCACGAAGGCTTCGTCAACTTTAACGCGGGCACCGAAGGCCCGGGCATGATCGAAGGCCGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1737118‑1736968‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgttAAAGTTGACGAAGCCTTCGTGCATGATGGTGGTGCCTTCGCCAATGTAGGCGCCCAGGCGCACACGGGCGGTGTCGGCGATACGCACGCCGGCCGGGACCACGTAGTCGGTCATTTTCGGGAACTTGTCCACCGAGAACACTTCCAG > NC_002947/1737010‑1737156 CGACTACGTGGTCCCGGCCGGCGTGCGTATCGCCGACACCGCCCGTGTGCGCCTGGGCGCCTACATTGGCGAAGGCACCACCATCATGCACATAGGCTTCGTCAACTTTAACGCGGGCACCGAAGGCCCGGGCATGATCGAAGGCCGCG > 7:150042/1‑149 ACTACGTGGTCCCGGCCGGCGTGCGTATCGCCGACACCGCCCGTGTGCGCCTGGGCGCCTACATTGGCGAAGGCACCACCATCATGCACGAAGGCTTCGTCAACTTTAACGCGGGCACCGAAGGCCCGGGCATGATCGAAGGCCGCGTT > 1:143327/1‑149 CTTTAACGCGGGCACCGAAGGCCCGGGCATGATCGAAGGCCGCGTTAAAGTTGACGAAGCCTTCGTGCATGATGGTGGTGCCTTCGCCAATGTAGGCGCCCAGGCGCACACGGGCGGTGTCGGCGATACGCACGCCGGCCGG < 3:32293/142‑1 CTTTAACGCGGGCACCGAAGGCCCGGGCATGATCGAAGGCCGCGTTAAAGTTGACGAAGCCTTCGTGCATGATGGTGGTGCCTTCGCCAATGTAGGCGCCCAGGCGCACACGGGCGGTGTCGGCGATACGCACGCCGGCCGG > 4:32293/1‑142 ACGCGGGCACCGAAGGCCCGGGCATGATCGAAGGCCGCGTTAAAGTTGACGAAGCCTTCGTGCATGATGGTGGTGCCTTCGCCAATGTAGGCGCCCAGGCGCACACGGGCGGTGTCGGCGATACGCACGCCGGCCGGGACCACGTAGTC > 6:104387/1‑149 AAGGCCGCGTTAAAGTTGACGAAGCCTTCGTGCATGATGGTGGTGCCTTCGCCAATGTAGGCGCCCAGGCGCACACGGGCGGTGTCGGCGATACGCACGCCGGCCGGGACCACGTAGTCGGTCATTTTCGGGAACTTGTCCACCGAGAA < 5:104387/149‑1 CGCGTTAAAGTTGACGAAGCCTTCGTGCATGATGGTGGTGCCTTCGCCAATGTAGGCGCCCAGGCGCACACGGGCGGTGTCGGCGATACGCACGCCGGCCGGGACCACGTAGTCGGTCATTTTCGGGAACTTGTCCACCGAGAACACTT > 1:75485/1‑149 CGCGTTAAAGTTGACGAAGCCTTCGTGCATGATGGTGGTGCCTTCGCCAATGTAGGCGCCCAGGCGCACACGGGCGGTGTCGGCGATACGCACGCCGGCCGGGACCACGTAGTCGGTCATTTTCGGGAACTTGTCCACCGAGAACACTT > 7:154404/1‑149 TTAAAGTTGACGAAGCCTTCGTGCATGATGGTGGTGCCTTCGCCAATGTAGGCGCCCAGGCGCACACGGGCGGTGTCGGCGATACGCACGCCGGCCGGGACCACGTAGTCGGTCATTTTCGGGAACTTGTCCACC > 3:170804/1‑135 TTAAAGTTGACGAAGCCTTCGTGCATGATGGTGGTGCCTTCGCCAATGTAGGCGCCCAGGCGCACACGGGCGGTGTCGGCGATACGCACGCCGGCCGGGACCACGTAGTCGGTCATTTTCGGGAACTTGTCCACC < 4:170804/135‑1 TAAAGTTGACGAAGCCTTCGTGCATGATGGTGGTGCCTTCGCCAATGTAGGCGCCCAGGCGCACACGGGCGGTGTCGGCGATACGCACGCCGGCCGGGACCACGTAGTCGGTCATTTTCGGGAACTTGTCCACCGAGAACACTTCCAG > 1:297983/1‑148 CGACTACGTGGTCCCGGCCGGCGTGCGTATCGCCGACACCGCCCGTGTGCGCCTGGGCGCCTACATTGGCGAAGGCACCACCATCATGCACGAAGGCTTCGTCAACTTTAACGCGGGCACCGAAGGCCCGGGCATGATCGAAGGCCGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1737118‑1736968‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgttAAAGTTGACGAAGCCTTCGTGCATGATGGTGGTGCCTTCGCCAATGTAGGCGCCCAGGCGCACACGGGCGGTGTCGGCGATACGCACGCCGGCCGGGACCACGTAGTCGGTCATTTTCGGGAACTTGTCCACCGAGAACACTTCCAG > NC_002947/1737010‑1737156 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |