New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1886308 =	46 (0.930)	3 (0.060)	3/244	NT	7.2%	coding (975/1488 nt)	rmuC	DNA recombination limiting inversions protein
	?	NC_002947	1886347 =	34 (0.720)					coding (1014/1488 nt)	rmuC	DNA recombination limiting inversions protein

CAGGCTGTGCAGGCCTTCGAGGCGGCTGTAGTCCTTGCTCGACAGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1886356‑1886308 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcctGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCGG  >  NC_002947/1886347‑1886491                                                                                                                                                                                                    CAGGCTGTGCAGGCCTTCGAGGCGGCTGTAGTCCTTGCTCGACAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGG                                               >  8:12043/1‑149       GTGCAGGCCTTCGAGGCGGCTGTAGTCCTTGCTCGACAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGG                                               >  8:67272/1‑143             GCCTTCGAGGCGGCTGTAGTCCTTGCTCGACAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATT                                   <  7:12043/149‑1                                             cGCCTGCACAGCCTGGACTTCGTGTTGTTGGTCGTGCCCATCGAGGCTGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGGGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCG   <  8:281126/148‑1                                              GCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCGG  <  2:7570/149‑1                                                                                                                                                                                                    CAGGCTGTGCAGGCCTTCGAGGCGGCTGTAGTCCTTGCTCGACAGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1886356‑1886308 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcctGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCGG  >  NC_002947/1886347‑1886491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.