New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1886308 =	46 (0.930)	3 (0.060)	3/244	NT	7.2%	coding (975/1488 nt)	rmuC	DNA recombination limiting inversions protein
	?	NC_002947	1886347 =	34 (0.720)					coding (1014/1488 nt)	rmuC	DNA recombination limiting inversions protein

AGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCGG  >  NC_002947/1886199‑1886491                                                                                                                                                     |                                                                                                                                                 aGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTg                                                                                                                                                  <  8:289137/149‑1 (MQ=255)  ggtggtggtGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTg                                                                                                                                                  >  4:245657/1‑148 (MQ=255)          ccggtcgaaggcctcctggaacaggttcggctcggcctgcagggccgccgaaaaggccgcctcgatgggcacgaacaacaacacgaagtccaggctgtgcAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGcac                                                                                                                                               >  8:67272‑M1/101‑143 (MQ=255)          ccggtcgaaggcctcctggaacaggttcggctcggcctgcagggccgccgaaaaggccgcctcgatgggcacgaacaacaacacgaagtccaggctgtgcAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTg                                                                                                                                         >  8:12043‑M1/101‑149 (MQ=255)                 cAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGAc                                                                                                                                      >  8:63914/1‑145 (MQ=255)                 cAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGAc                                                                                                                                      <  7:63914/145‑1 (MQ=255)                  aaGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCgt                                                                                                                                 <  8:158179/149‑1 (MQ=255)                    ggTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCgtgt                                                                                                                               <  3:245657/149‑1 (MQ=255)                        aGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGtgttgtt                                                                                                                           <  8:167638/149‑1 (MQ=255)                        aGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGtgttgtt                                                                                                                           <  8:163073/149‑1 (MQ=255)                               cGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTg                                                                                                                    >  4:233202/1‑149 (MQ=255)                               cGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTg                                                                                                                    <  3:233202/149‑1 (MQ=255)                                         cttcgtCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCgt                                                                                                                                 <  5:149348/121‑1 (MQ=255)                                         cttcgtCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCgt                                                                                                                                 >  6:149348/6‑126 (MQ=255)                                          cagTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAggc                                                                                                         >  8:56215/1‑149 (MQ=255)                                                 ttGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCttt                                                                                                  <  3:208353/149‑1 (MQ=255)                                                            gacgaAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCt                                                                                       >  2:172664/1‑149 (MQ=255)                                                            gacgaAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTCCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGcc                                                                                                     >  2:188058/1‑135 (MQ=255)                                                                         tCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGgccgagcc                                                                           >  7:274575/1‑148 (MQ=255)                                                                            agcagcATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAAc                                                                       <  7:56215/149‑1 (MQ=255)                                                                                gcaTGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGt                                                                   >  4:131965/1‑149 (MQ=255)                                                                                 caTGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGtt                                                                  >  1:190473/1‑149 (MQ=255)                                                                                  aTGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTc                                                                 >  5:115186/1‑149 (MQ=255)                                                                                    gtgCAGTCGCTGCGCAGCCACGTCAATGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTc                                                                 >  1:7570/1‑147 (MQ=255)                                                                                     tgCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCag                                                              <  1:172664/149‑1 (MQ=255)                                                                                        aGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCaggag                                                           >  7:281126/1‑149 (MQ=255)                                                                                                cgcAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTc                                                     <  1:103946/147‑1 (MQ=255)                                                                                                   aGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGa                                                   <  5:191086/146‑1 (MQ=255)                                                                                                   aGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGa                                                   >  6:191086/1‑146 (MQ=255)                                                                                                    gCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTc                                                     >  1:114709/1‑143 (MQ=255)                                                                                                    gCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTc                                                     <  2:114709/143‑1 (MQ=255)                                                                                                    caggctgtgcaggccttcgaggcggctgtagtccttgctcgacaggcctGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCgg                                               >  8:12043‑M2/50‑149 (MQ=255)                                                                                                          gtgcaggccttcgaggcggctgtagtccttgctcgacaggcctGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCgg                                               >  8:67272‑M2/44‑143 (MQ=255)                                                                                                            aaaGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGt                                       >  4:196372/1‑149 (MQ=255)                                                                                                            aaaGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGt                                       >  2:224254/1‑149 (MQ=255)                                                                                                                gccttcgaggcggctgtagtccttgctcgacaggcctGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGAtt                                   <  7:12043‑M2/112‑1 (MQ=255)                                                                                                                             ggACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGAtt                                   <  7:75603/136‑1 (MQ=255)                                                                                                                             ggACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGAtt                                   >  8:75603/1‑136 (MQ=255)                                                                                                                                 tACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGtt                  >  3:177589/1‑149 (MQ=255)                                                                                                                                     gccgccTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTg              <  3:131965/149‑1 (MQ=255)                                                                                                                                     gccgccTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGGTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTg              <  8:274575/149‑1 (MQ=255)                                                                                                                                                cgcctGCACAGCCTGGACTTCGTGTTGTTGGTCGTGCCCATCGAGGCTGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGGGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCg   <  8:281126‑M2/144‑1 (MQ=255)                                                                                                                                                 gcctGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCgg  <  2:7570‑M2/145‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                 AGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGTGATTGTCAGCCCTACCACGTTGCTGGCCACCTTGCGG  >  NC_002947/1886199‑1886491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.