| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1886308 = | 46 (0.930) | 3 (0.060) | 3/244 | NT | 7.2% | coding (975/1488 nt) | rmuC | DNA recombination limiting inversions protein |
| ? | NC_002947 | 1886347 = | 34 (0.720) | coding (1014/1488 nt) | rmuC | DNA recombination limiting inversions protein | |||||
CCAGCCGGATGTGCTGATCATGCTGCCCGGCGACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGT > NC_002947/1886161‑1886454 | ccAGCCGGATGTGCTGATCATGCTGCCCGGCGACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAg > 2:232667/1‑149 (MQ=255) ccgcaaggtggccagcaacgtggtagggctgacaatcacgatctgccggtcgaaggcctcctggaacaggttcggctcggcctgcagggccgccgaaaaggccgcctcgatgggcacgaacaacaacacgaagtccaggctgtgcAGGc < 2:7570‑M1/4‑1 (MQ=255) cgcaaggtggccagcaacgtggtagggctgacaatcccgatctgccggtcgaaggcctcctggaacaggttcggctcggcctgcagggccgccgaaaaggcagcctcgatgggcacgaccaacaacacgaagtccaggctgtgcAGgcg < 8:281126‑M1/5‑2 (MQ=255) aTCATGCTGCGCGGCGACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGa < 2:99285/149‑1 (MQ=255) aTCATGCTGCCCGGCCACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGATGCGCACAACCAGCATCTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGa > 2:103946/1‑149 (MQ=255) tgctgcCCGGCGACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTa > 7:158179/1‑148 (MQ=255) tgcCCGGCGACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAgc > 7:167638/1‑149 (MQ=255) tgcCCGGCGACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAgc > 7:163073/1‑149 (MQ=255) cccGGCGACAAGCAGGTGGTGTTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAgc < 8:75394/147‑1 (MQ=255) gACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCg > 4:208353/1‑148 (MQ=255) aCAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCg > 6:180877/1‑147 (MQ=255) cAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTc < 4:202358/123‑1 (MQ=255) cAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTc > 3:202358/1‑123 (MQ=255) cAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAg < 5:180877/149‑1 (MQ=255) aaGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAgg < 5:72054/149‑1 (MQ=255) aatcacgatctgccggtcgaaggcctcctggaacaggttcggctcggcctgcagggccgccgaaaaggccgcctcgatgggcacgaacaacaacacgaagtccaggctgtgcAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGc < 7:12043‑M1/37‑1 (MQ=255) aGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGc < 1:232667/149‑1 (MQ=255) gCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAg < 2:53122/127‑1 (MQ=255) gCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAg > 1:53122/1‑127 (MQ=255) aGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTg < 8:289137/149‑1 (MQ=255) ggtggtggtGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTg > 4:245657/1‑148 (MQ=255) ccggtcgaaggcctcctggaacaggttcggctcggcctgcagggccgccgaaaaggccgcctcgatgggcacgaacaacaacacgaagtccaggctgtgcAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGcac > 8:67272‑M1/101‑143 (MQ=255) ccggtcgaaggcctcctggaacaggttcggctcggcctgcagggccgccgaaaaggccgcctcgatgggcacgaacaacaacacgaagtccaggctgtgcAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTg > 8:12043‑M1/101‑149 (MQ=255) cAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGAc > 8:63914/1‑145 (MQ=255) cAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGAc < 7:63914/145‑1 (MQ=255) aaGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCgt < 8:158179/149‑1 (MQ=255) ggTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCgtgt < 3:245657/149‑1 (MQ=255) aGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGtgttgtt < 8:163073/149‑1 (MQ=255) aGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGtgttgtt < 8:167638/149‑1 (MQ=255) gCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGc < 2:302779/98‑1 (MQ=255) gCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGc > 1:302779/1‑98 (MQ=255) cGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTg > 4:233202/1‑149 (MQ=255) cGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTg < 3:233202/149‑1 (MQ=255) cttcgtCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCgt < 5:149348/121‑1 (MQ=255) cttcgtCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCgt > 6:149348/6‑126 (MQ=255) cagTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAggc > 8:56215/1‑149 (MQ=255) ttGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCttt < 3:208353/149‑1 (MQ=255) gacgaAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCt > 2:172664/1‑149 (MQ=255) gacgaAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTCCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGcc > 2:188058/1‑135 (MQ=255) tCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGc > 3:48679/1‑41 (MQ=255) tCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGc < 4:48679/41‑1 (MQ=255) tCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGgccgagcc > 7:274575/1‑148 (MQ=255) agcagcATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAAc < 7:56215/149‑1 (MQ=255) gcaTGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGt > 4:131965/1‑149 (MQ=255) caTGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGtt > 1:190473/1‑149 (MQ=255) aTGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTc > 5:115186/1‑149 (MQ=255) gtgCAGTCGCTGCGCAGCCACGTCAATGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTc > 1:7570/1‑147 (MQ=255) tgCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCag < 1:172664/149‑1 (MQ=255) aGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCaggag > 7:281126/1‑149 (MQ=255) cgcAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTc < 1:103946/147‑1 (MQ=255) aGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGa > 6:191086/1‑146 (MQ=255) aGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGa < 5:191086/146‑1 (MQ=255) gCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTc < 2:114709/143‑1 (MQ=255) gCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTc > 1:114709/1‑143 (MQ=255) aaaGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGt > 2:224254/1‑149 (MQ=255) aaaGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGt > 4:196372/1‑149 (MQ=255) | CCAGCCGGATGTGCTGATCATGCTGCCCGGCGACAAGCAGGTGGTGGTGGACGCCAAGGTCAGCCTCACGGCGTACCAGCAGTTCGTTGCCGGCAACGACGAAGTTGCGCTCAAGCAGCATGTGCAGTCGCTGCGCAGCCACGTCAAAGGCCTGTCGAGCAAGGACTACAGCCGCCTCGAAGGCCTGCACAGCCTGGACTTCGTGTTGTTGTTCGTGCCCATCGAGGCGGCCTTTTCGGCGGCCCTGCAGGCCGAGCCGAACCTGTTCCAGGAGGCCTTCGACCGGCAGATCGT > NC_002947/1886161‑1886454 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |