New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1928727	40 (0.810)	4 (0.090)	4/242	NT	9.7%	coding (1365/2154 nt)	PP_1728	membrane protein
	?	NC_002947	= 1928783	37 (0.790)					coding (1309/2154 nt)	PP_1728	membrane protein

ACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1928575‑1928727 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcagcTTCGCCGAGGGCGACGGCCATGACATCAGCCTGCGCCTGCTGGGCCTGGCCGGCACGCTGATCGTG  <  NC_002947/1928783‑1928718                                                                                                                                                                                                                             ACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGAT                                                                        <  1:263051/149‑1         GATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGC                                                                    <  3:199902/145‑1         GATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGC                                                                    >  4:199902/1‑145               GATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCTTCGCCGAGG                                                          >  6:83564/1‑149                                                    ATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCTTCGCCGAGGGCGACGGCCATGACATCAGCCTGCGCCTGCTGGGCCT                     >  5:9720/1‑149                                                                      TTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCTTCGCCGAGGGCGACGGCCATGACATCAGCCTGCGCCTGCTGGGCCTGGCCGGCACGCTGATCGT   <  6:9720/149‑1                                                                        GGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCTTCGCCGAGGGCGACGGCCATGACATCAGCCTGCGCCTGCTGGGCCTGGCCGGCACGCTGATCGTG  <  5:83564/148‑1                                                                                                                                                                                                                             ACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1928575‑1928727 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcagcTTCGCCGAGGGCGACGGCCATGACATCAGCCTGCGCCTGCTGGGCCTGGCCGGCACGCTGATCGTG  <  NC_002947/1928783‑1928718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.