New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1928727	40 (0.810)	4 (0.090)	4/242	NT	9.7%	coding (1365/2154 nt)	PP_1728	membrane protein
	?	NC_002947	= 1928783	37 (0.790)					coding (1309/2154 nt)	PP_1728	membrane protein

GATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAA  >  NC_002947/1928580‑1928867                                                                                                                                                      |                                                                                                                                             gatgatGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCg                                                                                                                                             >  2:79047/1‑149 (MQ=255)    gatgaAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGC                                                                                                                                              >  4:199902‑M1/1‑145 (MQ=255)    gatgaAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGC                                                                                                                                              <  3:199902‑M1/145‑1 (MQ=255)       gaAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCgg                                                                                                                                       >  8:78566/1‑149 (MQ=255)          gATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCttcgccgagg                                                                                                                                    >  6:83564‑M1/1‑139 (MQ=255)                cACGAACATAACGTTGCGAATCAACGTCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGcc                                                                                                                                >  2:51424/1‑147 (MQ=255)                      cATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAgcaggc                                                                                                                        <  3:233263/149‑1 (MQ=255)                                cGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGa                                                                                                               <  8:82274/148‑1 (MQ=255)                                 gAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATg                                                                                                             >  2:260042/1‑149 (MQ=255)                                    tCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCa                                                                                                          <  3:150747/149‑1 (MQ=255)                                    tCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCa                                                                                                          <  3:145926/149‑1 (MQ=255)                                     cAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCAt                                                                                                         >  8:136313/1‑149 (MQ=255)                                         ggCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGcc                                                                                                     >  3:129551/1‑149 (MQ=255)                                          gCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCg                                                                                                    >  2:96228/1‑149 (MQ=255)                                          gCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCg                                                                                                    <  5:187468/149‑1 (MQ=255)                                           catcatGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGt                                                                                                   <  7:78566/149‑1 (MQ=255)                                            atcatGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCTTCGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGt                                                                                                   <  1:79047/149‑1 (MQ=255)                                               atGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCttcgccgagggcgacggccatgacatcagcctgcgcctgctgggcct                                                                                               >  5:9720‑M1/1‑102 (MQ=255)                                               atGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGcc                                                                                               <  7:136313/149‑1 (MQ=255)                                                  gTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTc                                                                                            <  4:266987/149‑1 (MQ=255)                                                   tttGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCg                                                                                           >  3:44924/1‑149 (MQ=255)                                                        gcACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCca                                                                                                                              <  2:192226/109‑1 (MQ=255)                                                        gcACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCca                                                                                                                              >  1:192226/1‑109 (MQ=255)                                                        gcACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGaa                                                                                      <  1:51424/149‑1 (MQ=255)                                                            gggCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCcagc                                                                                                                            >  4:309488/1‑107 (MQ=255)                                                                 ttGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCttcgccgagggcgacggccatgacatcagcctgcgcctgctgggcctggccggcacgctgatcgt                                                                             <  6:9720‑M1/149‑66 (MQ=255)                                                                   ggCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCttcgccgagggcgacggccatgacatcagcctgcgcctgctgggcctggccggcacgctgatcgtg                                                                            <  5:83564‑M1/148‑67 (MQ=255)                                                                         cccccGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGc                                                                     >  4:112258/1‑149 (MQ=255)                                                                            ccGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGcccc                                                                  >  4:28373/1‑149 (MQ=255)                                                                            ccGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGccc                                                                   >  5:205557/1‑148 (MQ=255)                                                                                 gcgAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACAcg                                                             >  6:15572/1‑149 (MQ=255)                                                                                  cgAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACAcgc                                                            <  1:96228/149‑1 (MQ=255)                                                                                   gAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACAcgcg                                                           >  3:39620/1‑149 (MQ=255)                                                                                             gggCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATgg                                                                                                       <  6:95568/95‑1 (MQ=255)                                                                                             gggCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATgg                                                                                                       >  5:95568/1‑95 (MQ=255)                                                                                             gggCATGGGGTACGGCGGGGTCTGCAAGGATCCACACCAGCCAGGCC‑ACTCTAAAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCaa                                                  <  1:260042/149‑1 (MQ=255)                                                                                                 aTGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGa                                             >  3:76398/1‑149 (MQ=255)                                                                                                    gtgtACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATg                                           <  3:28373/148‑1 (MQ=255)                                                                                                       tACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAaca                                       >  8:3885/1‑149 (MQ=255)                                                                                                                   tGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAacac                                      <  7:81573/138‑1 (MQ=255)                                                                                                                   tGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAacac                                      >  8:81573/1‑138 (MQ=255)                                                                                                                     cAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAAc                         <  7:3885/149‑1 (MQ=255)                                                                                                                             cacaCCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCAc                 <  4:76398/149‑1 (MQ=255)                                                                                                                              acacCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCAc                 >  4:115113/1‑148 (MQ=255)                                                                                                                                acCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACcag              >  4:282811/1‑149 (MQ=255)                                                                                                                                  cagccagGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACcag              >  6:256771/1‑147 (MQ=255)                                                                                                                                        ggCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGc      <  4:44924/149‑1 (MQ=255)                                                                                                                                           c‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAgctgatcgtggcctggctggtgtggatccttgcagacaccgccgtacaccatgccctggtgcgctcgcgccgggggctggcc    <  5:83564‑M2/148‑83 (MQ=255)                                                                                                                                             aCGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAgctgatcgtggcctggctggtgtggatccttgcagacaccgccgtacaccatgccctggtgcgctcgcgccgggggctggccaa  <  6:9720‑M2/149‑85 (MQ=255)                                                                                                                                                      cGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCa                  <  6:109506/125‑1 (MQ=255)                                                                                                                                                      cGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCa                  >  5:109506/1‑125 (MQ=255)                                                                                                                                                      |                                                                                                                                             GATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCC‑ACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAA  >  NC_002947/1928580‑1928867

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.