New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1928727	40 (0.810)	4 (0.090)	4/242	NT	9.7%	coding (1365/2154 nt)	PP_1728	membrane protein
	?	NC_002947	= 1928783	37 (0.790)					coding (1309/2154 nt)	PP_1728	membrane protein

GCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATG  >  NC_002947/1928635‑1928930                                                                                                                                                      |                                                                                                                                                    gcACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGaa                                                                                                                                                     <  1:51424/149‑1 (MQ=255)                  cccccGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGc                                                                                                                                    >  4:112258/1‑149 (MQ=255)                     ccGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGcccc                                                                                                                                 >  4:28373/1‑149 (MQ=255)                     ccGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGccc                                                                                                                                  >  5:205557/1‑148 (MQ=255)                          gcgAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACAcg                                                                                                                            >  6:15572/1‑149 (MQ=255)                           cgAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACAcgc                                                                                                                           <  1:96228/149‑1 (MQ=255)                            gAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACAcgcg                                                                                                                          >  3:39620/1‑149 (MQ=255)                                      gggCATGGGGTACGGCGGGGTCTGCAAGGATCCACACCAGCCAGGCCACTCTAAAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCaa                                                                                                                 <  1:260042/149‑1 (MQ=255)                                          aTGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGa                                                                                                            >  3:76398/1‑149 (MQ=255)                                             gtgtACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATg                                                                                                          <  3:28373/148‑1 (MQ=255)                                                tACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAaca                                                                                                      >  8:3885/1‑149 (MQ=255)                                                            tGCAAGGATCCACACCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAacac                                                                                                     >  8:81573/1‑138 (MQ=255)                                                            tGCAAGGATCCACACCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAacac                                                                                                     <  7:81573/138‑1 (MQ=255)                                                              cAAGGATCCACACCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAAc                                                                                        <  7:3885/149‑1 (MQ=255)                                                                      cacaCCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCAc                                                                                <  4:76398/149‑1 (MQ=255)                                                                       acacCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCAc                                                                                >  4:115113/1‑148 (MQ=255)                                                                         acCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACcag                                                                             >  4:282811/1‑149 (MQ=255)                                                                           cagccagGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACcag                                                                             >  6:256771/1‑147 (MQ=255)                                                                                 ggCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGc                                                                     <  4:44924/149‑1 (MQ=255)                                                                                    cACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAgctgatcgtggcctggctggtgtggatccttgcagacaccgccgtacaccatgccctggtgcgctcgcgccgggggctggcc                                                                   <  5:83564‑M2/148‑83 (MQ=255)                                                                                     aCGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAgctgatcgtggcctggctggtgtggatccttgcagacaccgccgtacaccatgccctggtgcgctcgcgccgggggctggccaa                                                                 <  6:9720‑M2/149‑85 (MQ=255)                                                                                              cGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCa                                                                                 <  6:109506/125‑1 (MQ=255)                                                                                              cGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCa                                                                                 >  5:109506/1‑125 (MQ=255)                                                                                                tGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAgg                                                       <  5:256771/149‑1 (MQ=255)                                                                                                  ccGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCg                                                     >  4:89625/1‑149 (MQ=255)                                                                                                      ccAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCg                                                 <  3:115113/149‑1 (MQ=255)                                                                                                        aGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAgctgatcgtggcctggctggtgtggatccttgcagacaccgccgtacaccatgccctggtgcgctcgcgccgggggctggccaacgcccgtgcgcaaaccat                                               >  5:9720‑M2/1‑47 (MQ=255)                                                                                                          gCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGgtgt                                             <  3:282811/149‑1 (MQ=255)                                                                                                                   gcgcaggcTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCt                                    >  4:221970/1‑149 (MQ=255)                                                                                                                        ggcTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGgcgc                               >  3:5678/1‑149 (MQ=255)                                                                                                                          cTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCtt                             <  4:5678/149‑1 (MQ=255)                                                                                                                          cTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCtt                             <  6:205557/149‑1 (MQ=255)                                                                                                                           tGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACcagca                                                                           <  6:57780/102‑1 (MQ=255)                                                                                                                           tGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACcagca                                                                           >  5:57780/1‑102 (MQ=255)                                                                                                                             aTGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGc                           <  5:15572/148‑1 (MQ=255)                                                                                                                                           gCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGt            <  3:211419/149‑1 (MQ=255)                                                                                                                                             ccTCGGCGAAgctgatcgtggcctggctggtgtggatccttgcagacaccgccgtacaccatgccctggtgcgctcgcgccgggggctggccaacgcccgtgcgcaaaccatgatgccgttgattcgcaacgtgatgttcgtggtcatc          >  6:83564‑M2/1‑10 (MQ=255)                                                                                                                                              cTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGt                                                                                    >  1:251329/1‑74 (MQ=255)                                                                                                                                              cTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGt                                                                                    <  2:251329/74‑1 (MQ=255)                                                                                                                                                 ggCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTggcgg      >  6:66819/1‑149 (MQ=255)                                                                                                                                                 ggCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTggcg       <  4:39620/148‑1 (MQ=255)                                                                                                                                                 ggCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTggc        <  5:4916/147‑1 (MQ=255)                                                                                                                                                  gCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTggcggc     <  4:129551/149‑1 (MQ=255)                                                                                                                                                     aaGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATg  <  3:112258/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    GCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGAT‑CAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTTGCTGGCCCGCTTGGGGTTGGCGGCATG  >  NC_002947/1928635‑1928930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.