New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2228920 =	39 (0.790)	3 (0.060)	3/248	NT	7.1%	coding (56/783 nt)	ycfH	tRNA D‑aminoacylase
	?	NC_002947	2228956 =	41 (0.860)					coding (92/783 nt)	ycfH	tRNA D‑aminoacylase

CCGACCCCACGCTCACGCGCCGCCTGCAGGGCAGCGTCGAGGGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2228965‑2228920 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATG  >  NC_002947/2228956‑2229103                                                                                                                                                                                                    CCGACCCCACGCTCACGCGTCGCCTGCAGGGCAGCGTCGAGGGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGC                                                                                                  <  5:103195/98‑1 CCGACCCCACGCTCACGCGACGCCTGCAGGGCAGCGTCGAGGGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGC                                                                                                  >  6:103195/1‑98       CCACGCTCACGCGCCGCCTGCAGGGCAGCGTCGAGGGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCC                                         >  6:5637/1‑149                                            AGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGTGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTT        <  7:152751/145‑1                                             GCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAAT   >  2:227273/1‑149                                              CGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATG  <  6:198160/149‑1                                                                                                                                                                                                    CCGACCCCACGCTCACGCGCCGCCTGCAGGGCAGCGTCGAGGGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2228965‑2228920 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATG  >  NC_002947/2228956‑2229103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.