New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2228920 =	39 (0.790)	3 (0.060)	3/248	NT	7.1%	coding (56/783 nt)	ycfH	tRNA D‑aminoacylase
	?	NC_002947	2228956 =	41 (0.860)					coding (92/783 nt)	ycfH	tRNA D‑aminoacylase

AACCGCGCCTTGTTGCTTGAATCGCTGCTGGCTCACTGGCTGCAACTGCCGGGTGCCCGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCT  >  NC_002947/2228772‑2229067                                                                                                                                                     |                                                                                                                                                     cattccaacgccggggtttcgccaggggccaggtccagcgggtgcacgcccaccgagcagtcgacgtcagcgtactgctcgctcagcgccttcactgcacccgcattctcggcactgacgccaatgcacaggaaatgcccgaccccacg                                                                                                                                                      <  6:198160‑M1/1‑1 (MQ=255)  attccaacgccggggtttcgccaggggccaggtccagcgggtgcacgcccaccgagcagtcgacgtcagcgtactgctcgctcagcgccttcactgcacccgcattctcggcactgacgccaatgcacaggaaatgcccgaccccacGc                                                                                                                                                     >  2:227273‑M1/148‑149 (MQ=255)  aCCGCGCCTTGTTGCTTGAATCGCTGCTGGCTCACTGGCTGCAACTGCCGGGTGCCCGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACATCGACCGTCTTGACCTCACTGCTCACCAggg                                                                                                                                                      >  8:294736/1‑148 (MQ=255)       aacgccggggtttcgccaggggccaggtccagcgggtgcacgcccaccgagcagtcgacgtcagcgtactgctcgctcagcgccttcactgcacacgcattctcggcactgacgccaatgcacaggaaatgcccgaccccacGC‑t                                                                                                                                                   <  7:152751‑M1/3‑1 (MQ=255)                              ggCTCACTGGCTGCAACTGCCGGGTGCCCGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGgcgc                                                                                                                        >  8:270522/1‑149 (MQ=255)                                 tCACTGGCTGCAACTGCCGGGTGCCCGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGt                                                                                                                      >  2:217368/1‑148 (MQ=255)                                    cTGGCTGCAACTGCCGGGTGCCCGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAggc                                                                                                                             <  5:136427/138‑1 (MQ=255)                                    cTGGCTGCAACTGCCGGGTGCCCGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAggc                                                                                                                             >  6:136427/1‑138 (MQ=255)                                       gCTGCAACTGCCGGGTGCCCGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTg                                                                                                               <  4:236821/149‑1 (MQ=255)                                        gggtgcacgcccaccgagcagtcgacgtcagcgtactgctcgctcagcgccttcactgcacccgcattctcggcactgacgccaatgcacaggaaatgcccgaccccacGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTgg                                                                                                              >  6:5637‑M1/110‑149 (MQ=255)                                           cAACTGCCGGGTGCCCGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTggg                                                                                                             <  7:270522/147‑1 (MQ=255)                                                          cGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCtgtg                                                                                            >  1:205034/1‑149 (MQ=255)                                                               aTTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGcc                                                                                                                                     <  1:302607/103‑1 (MQ=255)                                                               aTTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGcc                                                                                                                                     >  2:302607/1‑103 (MQ=255)                                                               aTTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACATCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTg                                                                                       <  7:294736/149‑1 (MQ=255)                                                                        ttttCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TACCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTg                                                                              >  7:145806/1‑149 (MQ=255)                                                                            cATGTGTGCCGTTATCCGATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCTGGCATTTCCTGTGCATTGGCGTCAGTGCCg                                                                           <  3:132674/148‑1 (MQ=255)                                                                             aTGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCga                                                                          <  5:150050/148‑1 (MQ=255)                                                                                      gTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGt                                                                <  1:217368/149‑1 (MQ=255)                                                                                         aTCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCa                                                             >  7:200339/1‑149 (MQ=255)                                                                                             cATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCCCCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCt                                                                                               >  3:182454/1‑111 (MQ=255)                                                                                             cATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCt                                                                                               <  4:182454/111‑1 (MQ=255)                                                                                             cATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTg                                                          >  3:246280/1‑148 (MQ=255)                                                                                                 gcacccgcattctcggcactgacgccaatgcacaggaaatgcccgaccccacGC‑TCCCTCGACGCTGCCCTGCAGGCGTCGCGTGAGCGTGGGGTCgg                                                                                                        >  6:103195‑M1/53‑98 (MQ=255)                                                                                                 gcacccgcattctcggcactgacgccaatgcacaggaaatgcccgaccccacGC‑TCCCTCGACGCTGCCCTGCAGGCGACGCGTGAGCGTGGGGTCgg                                                                                                        <  5:103195‑M1/46‑1 (MQ=255)                                                                                                    gTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCCTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCt                                                  >  1:92029/1‑149 (MQ=255)                                                                                                        aTTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTgagc                                              <  2:205034/149‑1 (MQ=255)                                                                                                          tCCCATTGCCACATCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCTTCAGTGCCTAGAATGCGGGTGCGCGGAAGGCGCTgagcgc                                            >  1:267864/1‑148 (MQ=255)                                                                                                             cATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCa                                         <  8:145806/149‑1 (MQ=255)                                                                                                              aTTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTcc                                                                                                <  1:143888/93‑1 (MQ=255)                                                                                                              aTTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTcc                                                                                                >  2:143888/1‑93 (MQ=255)                                                                                                                      cTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGa                                >  6:172613/1‑149 (MQ=255)                                                                                                                         gACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGAc                               <  4:246280/147‑1 (MQ=255)                                                                                                                            cGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTgagcgag                                           <  3:40389/132‑1 (MQ=255)                                                                                                                            cGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTgagcgag                                           >  4:40389/1‑132 (MQ=255)                                                                                                                             gTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGAc                         <  5:290914/149‑1 (MQ=255)                                                                                                                             gTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGAc                         <  8:200339/149‑1 (MQ=255)                                                                                                                                ttGACCTCACTGCTCACCAGGGCTTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTg                       >  7:197035/1‑149 (MQ=255)                                                                                                                                 tGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCt                     >  6:249356/1‑149 (MQ=255)                                                                                                                                     cTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGt                 >  7:236533/1‑149 (MQ=255)                                                                                                                                      tCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTTAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTg                >  5:91188/1‑149 (MQ=255)                                                                                                                                         cTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTTAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGc             <  6:91188/149‑1 (MQ=255)                                                                                                                                         cTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGc             <  8:197035/149‑1 (MQ=255)                                                                                                                                            cTCCCCCGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCTTGAGCGGGGGGTCGGGCATTTCCTGTGCATTGGCGTCATGGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTTACGTCGACTGCTCGGTGGGCGt           <  2:267864/148‑1 (MQ=255)                                                                                                                                             tCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTg          >  1:262632/1‑148 (MQ=255)                                                                                                                                               aCCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCAc       >  7:115788/1‑149 (MQ=255)                                                                                                                                                 cAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGAc                         >  1:119394/1‑129 (MQ=255)                                                                                                                                                 cAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGAc                         <  2:119394/129‑1 (MQ=255)                                                                                                                                                    ggC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCt  >  4:140398/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AACCGCGCCTTGTTGCTTGAATCGCTGCTGGCTCACTGGCTGCAACTGCCGGGTGCCCGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCT  >  NC_002947/2228772‑2229067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.