New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2228920 =	39 (0.790)	3 (0.060)	3/248	NT	7.1%	coding (56/783 nt)	ycfH	tRNA D‑aminoacylase
	?	NC_002947	2228956 =	41 (0.860)					coding (92/783 nt)	ycfH	tRNA D‑aminoacylase

GCTGCAACTGCCGGGTGCCCGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATG  >  NC_002947/2228810‑2229103                                                                                                                                                    |                                                                                                                                                    gCTGCAACTGCCGGGTGCCCGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTg                                                                                                                                                   <  4:236821/149‑1 (MQ=255)  gggtgcacgcccaccgagcagtcgacgtcagcgtactgctcgctcagcgccttcactgcacccgcattctcggcactgacgccaatgcacaggaaatgcccgaccccacGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTgg                                                                                                                                                  >  6:5637‑M1/110‑149 (MQ=255)     cAACTGCCGGGTGCCCGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTggg                                                                                                                                                 <  7:270522/147‑1 (MQ=255)                    cGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCtgtg                                                                                                                                >  1:205034/1‑149 (MQ=255)                         aTTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACATCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTg                                                                                                                           <  7:294736/149‑1 (MQ=255)                                  ttttCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TACCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTg                                                                                                                  >  7:145806/1‑149 (MQ=255)                                      cATGTGTGCCGTTATCCGATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCTGGCATTTCCTGTGCATTGGCGTCAGTGCCg                                                                                                               <  3:132674/148‑1 (MQ=255)                                       aTGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCga                                                                                                              <  5:150050/148‑1 (MQ=255)                                                gTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGt                                                                                                    <  1:217368/149‑1 (MQ=255)                                                   aTCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCa                                                                                                 >  7:200339/1‑149 (MQ=255)                                                       cATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCCCCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCt                                                                                                                                   >  3:182454/1‑111 (MQ=255)                                                       cATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCt                                                                                                                                   <  4:182454/111‑1 (MQ=255)                                                       cATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTg                                                                                              >  3:246280/1‑148 (MQ=255)                                                           gcacccgcattctcggcactgacgccaatgcacaggaaatgcccgaccccacGC‑TCCCTCGACGCTGCCCTGCAGGCGTCGCGTGAGCGTGGGGTCgg                                                                                                                                            >  6:103195‑M1/53‑98 (MQ=255)                                                           gcacccgcattctcggcactgacgccaatgcacaggaaatgcccgaccccacGC‑TCCCTCGACGCTGCCCTGCAGGCGACGCGTGAGCGTGGGGTCgg                                                                                                                                            <  5:103195‑M1/46‑1 (MQ=255)                                                              gTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCCTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCt                                                                                      >  1:92029/1‑149 (MQ=255)                                                                  aTTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTgagc                                                                                  <  2:205034/149‑1 (MQ=255)                                                                    tCCCATTGCCACATCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCTTCAGTGCCTAGAATGCGGGTGCGCGGAAGGCGCTgagcgc                                                                                >  1:267864/1‑148 (MQ=255)                                                                       cATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCa                                                                             <  8:145806/149‑1 (MQ=255)                                                                        aTTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTcc                                                                                                                                    <  1:143888/93‑1 (MQ=255)                                                                        aTTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTcc                                                                                                                                    >  2:143888/1‑93 (MQ=255)                                                                                cTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGa                                                                    >  6:172613/1‑149 (MQ=255)                                                                                   gACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGAc                                                                   <  4:246280/147‑1 (MQ=255)                                                                                      cGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTgagcgag                                                                               <  3:40389/132‑1 (MQ=255)                                                                                      cGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTgagcgag                                                                               >  4:40389/1‑132 (MQ=255)                                                                                       gTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGAc                                                             <  5:290914/149‑1 (MQ=255)                                                                                       gTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGAc                                                             <  8:200339/149‑1 (MQ=255)                                                                                          ttGACCTCACTGCTCACCAGGGCTTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTg                                                           >  7:197035/1‑149 (MQ=255)                                                                                           tGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCt                                                         >  6:249356/1‑149 (MQ=255)                                                                                               cTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGt                                                     >  7:236533/1‑149 (MQ=255)                                                                                                tCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTTAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTg                                                    >  5:91188/1‑149 (MQ=255)                                                                                                   cTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTTAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGc                                                 <  6:91188/149‑1 (MQ=255)                                                                                                   cTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGc                                                 <  8:197035/149‑1 (MQ=255)                                                                                                      ccgaccccacgctcacgcgtcgcctgcagggcagcgtcgagggagcGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGc                                                                                                  <  5:103195‑M2/52‑1 (MQ=255)                                                                                                      ccgaccccacgctcacgcgacgcctgcagggcagcgtcgagggagcGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGc                                                                                                  >  6:103195‑M2/47‑98 (MQ=255)                                                                                                      cTCCCCCGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCTTGAGCGGGGGGTCGGGCATTTCCTGTGCATTGGCGTCATGGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTTACGTCGACTGCTCGGTGGGCGt                                               <  2:267864/148‑1 (MQ=255)                                                                                                       tCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTg                                              >  1:262632/1‑148 (MQ=255)                                                                                                         aCCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCAc                                           >  7:115788/1‑149 (MQ=255)                                                                                                           cAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGAc                                                             >  1:119394/1‑129 (MQ=255)                                                                                                           cAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGAc                                                             <  2:119394/129‑1 (MQ=255)                                                                                                            ccacgctcacgcgccgcctgcagggcagcgtcgagggagcGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCAccc                                         >  6:5637‑M2/41‑149 (MQ=255)                                                                                                              ggC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCt                                      >  4:140398/1‑149 (MQ=255)                                                                                                                      tCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACg                                                                        <  2:134262/108‑1 (MQ=255)                                                                                                                      tCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACg                                                                        >  1:134262/1‑108 (MQ=255)                                                                                                                               cccTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTgg                       <  2:262632/148‑1 (MQ=255)                                                                                                                                 cTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCg                     >  4:256229/1‑148 (MQ=255)                                                                                                                                    cAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAAc                 >  7:221682/1‑149 (MQ=255)                                                                                                                                       gcggcgCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAAcccc              >  5:198160/1‑149 (MQ=255)                                                                                                                                        cggcgCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCg             <  5:249356/149‑1 (MQ=255)                                                                                                                                             cgTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGtt        <  8:115788/149‑1 (MQ=255)                                                                                                                                                 agcGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGTGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGtt        <  7:152751‑M2/142‑1 (MQ=255)                                                                                                                                                 agagTGGGGTCGGGCATTTCCTGTGAATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGAGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTTGGCGTGCACCCGCTGGACCTGGACCCTGGCGAAACCCCGGCCTTgag     >  8:152751/4‑146 (MQ=255)                                                                                                                                                  gcGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAAt   >  2:227273‑M2/3‑149 (MQ=255)                                                                                                                                                   cGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATg  <  6:198160‑M2/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GCTGCAACTGCCGGGTGCCCGCTGATTTTCCATTTTTCATGTGTGCCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGACCTCACTGCTCACCAGGGC‑TCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATG  >  NC_002947/2228810‑2229103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.