New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2692260	40 (0.810)	4 (0.090)	4/244	NT	8.2%	coding (421/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein
	?	NC_002947	= 2692328	51 (1.080)					coding (489/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein

GATCAAAGTGAGTGCAGGCCTGCATGATGGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2692112‑2692260 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgcGGGCAGGCCCGGCTTGCCGACGGCCTTGCCATAAAGGTTGACCGTCTGAGCGGCGCCGGTACTGGTCGGCAGGGTGATGGTGTCGTCGACCGCCAGCAGCGCCGTACGCCCCGCGTCGGTATAGAGGTCGTACGGTACAAAGTT  <  NC_002947/2692328‑2692185                                                                                                                                                                                                                                                                                                       GATCAAAGTGAGTGCAGGCCTGCATGATGGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGC                                                                                                                                                  >  5:312448/1‑149                        ATGATGGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCGGGCAGGCCCGGCTTGCCGACGG                                                                                                                           >  8:88609/1‑149                                CAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCGGGCAGGCCCGGCTTGCCGACGGCCTTGCCA                                                                                                                   >  3:55619/1‑149                                                           GCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCGGGCAGGCCCGGCTTGCCGACGGCCTTGCCATAAAGGTTGACCGTCTGAGCGGCGC                                                                                          <  4:55619/147‑1                                                                                 TACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCGGGCAGGCCCGGCTTGCCGACGGCCTTGCCATAAAGGTTGACCGTCTGAGCGGCGCCGGTACTGGTCGGCAGGGTGATG                                                                   <  7:88609/148‑1                                                                                                                                                CCCTGCGGGCAGGCCCGGCTTGCCGACGGCCTTGCCATAAAGGTTGACCGTCTGAGCGGCGCCG                                                                                        <  1:45153/64‑1                                                                                                                                                CCCTGCGGGCAGGCCCGGCTTGCCGACGGCCTTGCCATAAAGGTTGACCGTCTGAGCGGCGCCG                                                                                        >  2:45153/1‑64                                                                                                                                                 CCTGCGGGCAGGCCCGGCTTGCCGACGGCCTTGCCATAAAGGTTGACCGTCTGAGCGGCGCCGGTACTGGTCGGCAGGGTGATGGTGTCGTCGACCGCCAGCAGCGCCGTACGCCCCGCGTCGGTATAGAGGTCGTACGGTACAAAGTT  <  1:137647/149‑1                                                                                                                                                 CCTGCGGGCAGGCCCGGCTTGCCGACGGCCTTGCCATAAAGGTTGACCGTCTGAGCGGCGCCGGTACTGGTCGGCAGGGTGATGGTGTCGTCGACCGCCAGCAGCGCCGTACGCCCCGCGTCGGTATAGAGGTCGTACGGTACAAAGTT  <  7:63030/149‑1                                                                                                                                                                                                                                                                                                       GATCAAAGTGAGTGCAGGCCTGCATGATGGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2692112‑2692260 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgcGGGCAGGCCCGGCTTGCCGACGGCCTTGCCATAAAGGTTGACCGTCTGAGCGGCGCCGGTACTGGTCGGCAGGGTGATGGTGTCGTCGACCGCCAGCAGCGCCGTACGCCCCGCGTCGGTATAGAGGTCGTACGGTACAAAGTT  <  NC_002947/2692328‑2692185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.