New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2692260	40 (0.810)	4 (0.090)	4/244	NT	8.2%	coding (421/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein
	?	NC_002947	= 2692328	51 (1.080)					coding (489/534 nt)	PP_2359	putative Type 1 pili subunit CsuA/B protein

GATCAAAGTGAGTGCAGGCCTGCATGATGGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGCCTGACT  >  NC_002947/2692112‑2692406                                                                                                                                                     |                                                                                                                                                   gATCAAAGTGAGTGCAGGCCTGCATGATGGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGC                                                                                                                                                    >  5:312448‑M1/1‑149 (MQ=255)   tCAAAGTGAGTGCAGGCCTGCATGATGGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGcc                                                                                                                                                   >  8:203521/1‑148 (MQ=255)     aaaGTGAGTGCAGGCCTGCATGATGGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGAc                                                                                                                                                <  6:294154/149‑1 (MQ=255)     aaaGTGAGTGCAGGCCTGCATGATGGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGAc                                                                                                                                                <  2:103975/149‑1 (MQ=255)       agtgagtgCAGGCCTGCATGATGGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGAc                                                                                                                                                >  2:133886/1‑147 (MQ=255)                  gCCTGCATGATGGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGcgcc                                                                                                                                   >  5:326095/1‑149 (MQ=255)                   ccTGCATGATGGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGcgccg                                                                                                                                  <  6:312448/149‑1 (MQ=255)                     tGCATGATGGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCt                                                                                                                                >  4:158077/1‑149 (MQ=255)                      gCATGATGGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCt                                                                                                                                >  1:238162/1‑148 (MQ=255)                       cATGATGGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCa                                                                                                                              <  1:133886/149‑1 (MQ=255)                        atgatgGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCgggcaggcccggcttgccgacgg                                                                                                                             >  8:88609‑M1/1‑126 (MQ=255)                        atgatgGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCt                                                                                                                                >  8:283117/1‑146 (MQ=255)                        atgatgGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCt                                                                                                                                <  7:283117/146‑1 (MQ=255)                                cAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCgggcaggcccggcttgccgacggccttgcca                                                                                                                     >  3:55619‑M1/1‑118 (MQ=255)                                  gTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAAcc                                                                                                                   <  6:326095/149‑1 (MQ=255)                                       gCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTAt                                                                                                              <  3:1263/149‑1 (MQ=255)                                          gTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATgg                                                                                                            >  1:168006/1‑148 (MQ=255)                                              cACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAgg                                                                                                       <  5:45992/149‑1 (MQ=255)                                                   gTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTc                                                                                                  >  4:160099/1‑149 (MQ=255)                                                         tCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAg                                                                                            >  7:67642/1‑149 (MQ=255)                                                           gCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCgggcaggcccggcttgccgacggccttgccataaaggttgaccgtctgagcggcgc                                                                                            <  4:55619‑M1/147‑57 (MQ=255)                                                              gATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCggg                                                                                       <  7:203521/149‑1 (MQ=255)                                                                          aaCTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTa                                                                                                               <  2:212058/113‑1 (MQ=255)                                                                          aaCTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTa                                                                                                               >  1:212058/1‑113 (MQ=255)                                                                          aaCTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCgcagg                                                                           <  7:63030‑M2/149‑6 (MQ=255)                                                                          aaCTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCgcagg                                                                           <  1:137647‑M2/149‑6 (MQ=255)                                                                             tttGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGgt                                                                        >  5:44305/1‑149 (MQ=255)                                                                                 tACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCgggcaggcccggcttgccgacggccttgccataaaggttgaccgtctgagcggcgccggtactggtcggcagggtgatg                                                                     <  7:88609‑M1/148‑80 (MQ=255)                                                                                   ccGTACGACCTCTATACCGACGCGGGTCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAg                                                                  >  2:137435/1‑149 (MQ=255)                                                                                    cGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGc                                                                 >  1:52848/1‑149 (MQ=255)                                                                                         gACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGacac                                                            <  8:67642/149‑1 (MQ=255)                                                                                               tataCCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACGAtc                                                        <  8:63030/147‑1 (MQ=255)                                                                                                 taCCGACGCGGGTCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACGATCTCgg                                                    <  1:137435/149‑1 (MQ=255)                                                                                                 taCCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACGATCTCgg                                                    <  3:158077/149‑1 (MQ=255)                                                                                                    cGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGCCGGTCACCCTTTATGGCAAGGCCGTCGGGAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGCCGCGAGCTCGGTCg                                                 >  2:300540/1‑149 (MQ=255)                                                                                                    cGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACGATCTCGGTc                                                  >  2:18712/1‑148 (MQ=255)                                                                                                      aCGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAg                                               <  2:168006/149‑1 (MQ=255)                                                                                                      aCGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAg                                               <  2:238162/149‑1 (MQ=255)                                                                                                              cGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGtt                                       <  2:52848/149‑1 (MQ=255)                                                                                                                tACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAg                                                                                                        <  5:57455/82‑1 (MQ=255)                                                                                                                tACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAg                                                                                                        >  6:57455/1‑82 (MQ=255)                                                                                                                               ggTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCggct                      <  6:44305/149‑1 (MQ=255)                                                                                                                                gTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACg                                                           <  2:67146/111‑1 (MQ=255)                                                                                                                                gTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACg                                                           >  1:67146/1‑111 (MQ=255)                                                                                                                                 tCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCggctgg                    >  6:55141/1‑149 (MQ=255)                                                                                                                                     cgccacCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGctggctgg                >  6:125311/4‑149 (MQ=255)                                                                                                                                         acCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCag             >  1:130099/1‑148 (MQ=255)                                                                                                                                           cATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCgcagggtgatggtgtcgtcgaccgccagcagcgccgtacgccccgcgtcggtatagaggtcgtacggta           <  7:88609‑M2/148‑70 (MQ=255)                                                                                                                                             tCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGc        <  2:137647/149‑1 (MQ=255)                                                                                                                                              cACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGcc       >  5:38628/1‑149 (MQ=255)                                                                                                                                                cccTGCgggcaggcccggcttgccgacggccttgccataaaggttgaccgtctgagcggcgccg                                                                                          >  2:45153‑M1/1‑6 (MQ=255)                                                                                                                                                cccTGCgggcaggcccggcttgccgacggccttgccataaaggttgaccgtctgagcggcgccg                                                                                          <  1:45153‑M1/64‑59 (MQ=255)                                                                                                                                                cccTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGgtgt                                                                      <  6:50645/84‑1 (MQ=255)                                                                                                                                                cccTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGgtgt                                                                      >  5:50645/1‑84 (MQ=255)                                                                                                                                                 ccTGCgggcaggcccggcttgccgacggccttgccataaaggttgaccgtctgagcggcgccggtactggtcggcagggtgatggtgtcgtcgaccgccagcagcgccgtacgccccgcgtcggtatagaggtcgtacggtacaaagtt    <  7:63030‑M1/149‑145 (MQ=255)                                                                                                                                                 ccTGCgggcaggcccggcttgccgacggccttgccataaaggttgaccgtctgagcggcgccggtactggtcggcagggtgatggtgtcgtcgaccgccagcagcgccgtacgccccgcgtcggtatagaggtcgtacggtacaaagtt    <  1:137647‑M1/149‑145 (MQ=255)                                                                                                                                                 ccTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGCCTGa    >  4:2165/1‑149 (MQ=255)                                                                                                                                                   tGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGCCTGACt  >  5:233996/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GATCAAAGTGAGTGCAGGCCTGCATGATGGCCAGTCGAGCGGTGGCACCCGTGCGCTCGCCGATGGTTCTGGCAACTTTGTACCGTACGACCTCTATACCGACGCGGGGCGTACGGCGCTGCTGGCGGTCGACGACACCATCACCCTGCCGACCAGTACCGGCGCCGCTCAGACGGTCAACCTTTATGGCAAGGCCGTCGGCAAGCCGGGCCTGCCCGCAGGGGTGTACAGCGACACGATCTCGGTCGAGCTGTCGTTCTGACCCATGCGCGGCTGGCTGGCAGGAGGCCTGACT  >  NC_002947/2692112‑2692406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.