New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3138572 =	37 (0.750)	4 (0.080)	4/250	NT	9.4%	coding (711/1350 nt)	PP_2754	OprD family outer membrane porin
	?	NC_002947	3138643 =	41 (0.850)					coding (782/1350 nt)	PP_2754	OprD family outer membrane porin

CCAGCGGCTGCACATGGTCGACGCTGAAGAACGACTGGTTCCATACGTCGTCGAGGCGGCTGCTGTGCAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3138645‑3138572 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAGCGTGCATGCCGGTCTGGCTGCCGGCGCTCATGG  >  NC_002947/3138643‑3138772                                                                                                                                                                                                              CCAGCGGCTGCACATGGTCGACGCTGAAGAACGACTGGTTCCATACGTCGTCGAGGCGGCTGCTGTGCAGGCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGC                                                          >  3:19556/1‑148  CAGCGGCTGCACATGGTCGACGCTGAAGAACGACTGGTTCCATACGTCGTCGAGGCGGCTGCTGTGCAGGCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGC                                                          >  7:97755/1‑147                           AAGAACGACTGGTTCCATACGTCGTCGAGGCGGCTGCTGTGCAGGCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAGCGT                                <  4:19556/148‑1                                                        GCGGCTGCTGTGCAGGCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAGCGTGCATGCCGGTCTGGCTGCCGGCGCTCATGG  <  8:97755/149‑1                                                                                                                                                                                                              CCAGCGGCTGCACATGGTCGACGCTGAAGAACGACTGGTTCCATACGTCGTCGAGGCGGCTGCTGTGCAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3138645‑3138572 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAGCGTGCATGCCGGTCTGGCTGCCGGCGCTCATGG  >  NC_002947/3138643‑3138772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.