New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3138572 =	37 (0.750)	4 (0.080)	4/250	NT	9.4%	coding (711/1350 nt)	PP_2754	OprD family outer membrane porin
	?	NC_002947	3138643 =	41 (0.850)					coding (782/1350 nt)	PP_2754	OprD family outer membrane porin

AGGGCGGCAAGCTGGAGTCGAGCAGTGACCGCAACGCCAGCAACCACCGTGGTGATCTCGGCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGC  >  NC_002947/3138427‑3138716                                                                                                                                                  |                                                                                                                                                 aGGGCGGCAAGCTGGAGTCGAGCAGTGACCGCAACGCCAGCAACCACCGTGGTGATCTCGGCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTgcgc                                                                                                                                               <  6:76910/149‑1 (MQ=255)    gcggcAAGCTGGAGTCGAGCAGTGACCGCAACGCCAGCAACCACCGTGGTGATCTCGGCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTg                                                                                                                                            <  1:154743/149‑1 (MQ=255)     cggcAAGCTGGAGTCGAGCAGTGACCGCAACGCCAGCAACCACCGTGGTGATCTCGGCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTg                                                                                                                                            >  4:90080/1‑148 (MQ=255)          aGCTGGAGTCGAGCAGTGACCGCAACGCCAGCAACCACCGTGGTGATCTCGGCACAGTCTATGCCGTGCGTATAAAGGGCGCCAACGATGTGGTCTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCAcag                                                                                                                                       >  2:259919/1‑148 (MQ=255)                ccatgagcgccggcagccagaccggcatgcacgctccatgagtcgttgtcgatctggccggccagcgcctggccgctgtcacgggtgcggtaataattgaggccggtcttcaggctcagctcgctacccaGCGCCTGCACAGCAgccgc                                                                                                                                <  8:97755‑M1/19‑1 (MQ=255)                        aGTGACCGCAACGCCAGCAACCACCGTGGTGATCTCGGCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTcgacga                                                                                                                        >  7:19974/1‑149 (MQ=255)                          tGACCGCAACGCCAGCAACCACCGTGGTGATCTCGGCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGacgacg                                                                                                                      <  5:295682/149‑1 (MQ=255)                              cGCAACGCCAGCAACCACCGTGGTGATCTCGGCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATg                                                                                                                  <  8:19974/149‑1 (MQ=255)                               gCAACGCCAGCAACCACCGTGGTGATCTCGGCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATg                                                                                                                  >  7:122876/1‑148 (MQ=255)                                       aGCAACCACCGTGGTGATCTCGGCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTc                                                                                                         <  1:156560/149‑1 (MQ=255)                                              acgctccatgagtcgttgtcgatctggccggccagcgcctggccgctgtcacgggtgcggtaataattgaggccggtcttcaggctcagctcgctacccaGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGttctt                                                                                                   <  4:19556‑M1/48‑1 (MQ=255)                                              accGTGGTGATCTCGGCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGttcttc                                                                                                  <  7:247367/149‑1 (MQ=255)                                                 gtggtgATCTCGTCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGTCGACGTATGGAACCAGTCGTTCTTCAGc                                                                                               <  4:224622/149‑1 (MQ=255)                                                   ggtgATCTCGGCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGATCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGt                                                                                             >  1:261459/1‑149 (MQ=255)                                                    gtgATCTCGGCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTc                                                                                            >  8:264516/1‑149 (MQ=255)                                                      gATCTCGTCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGTTGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTg                                                                                                                                                  <  7:68086/93‑1 (MQ=255)                                                           cGGCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAg                                                                                                           <  1:76216/127‑1 (MQ=255)                                                           cGGCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAg                                                                                                           >  2:76216/1‑127 (MQ=255)                                                            ggCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCAt                                                                                      <  7:264516/147‑1 (MQ=255)                                                                        gccggccagcgcctggccgctgtcacgggtgcggtaataattgaggccggtcttcaggctcagctcgctacccaGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTgg                                                                         >  3:19556‑M1/75‑148 (MQ=255)                                                                        gccggccagcgcctggccgctgtcacgggtgcggtaataattgaggccggtcttcaggctcagctcgctacccaGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTg                                                                          >  7:97755‑M1/75‑147 (MQ=255)                                                                        gCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTgg                                                                         <  8:122876/148‑1 (MQ=255)                                                                                  tCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCt                                                               <  2:261459/148‑1 (MQ=255)                                                                                    aaGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCAtg                                                                                     <  5:238441/124‑1 (MQ=255)                                                                                    aaGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGa                                                             <  3:90080/148‑1 (MQ=255)                                                                                    aaGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGa                                                             <  4:22955/148‑1 (MQ=255)                                                                                     aGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGc                                                           >  4:151170/1‑149 (MQ=255)                                                                                            cAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCgacgac                                                                                                                       >  2:105031/1‑82 (MQ=255)                                                                                                   gtggtgTACCTGGGTGGCTATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGcc                                              <  4:106622/148‑1 (MQ=255)                                                                                                     ggtgTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGAGCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGACGAGCGGCCTc                                            >  6:6946/1‑148 (MQ=255)                                                                                                     ggtgTACCTGGGTGGCGATTACAGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTc                                            >  8:225111/1‑148 (MQ=255)                                                                                                               ggTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCTCCTGCTCAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTAc                                   <  1:290377/147‑1 (MQ=255)                                                                                                                 tGGCGCTTACCGCTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCa                               <  8:13768/149‑1 (MQ=255)                                                                                                                     gATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCg                                                 >  6:264075/1‑127 (MQ=255)                                                                                                                     gATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCg                                                 <  5:264075/127‑1 (MQ=255)                                                                                                                     gATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCg                           >  5:271802/1‑149 (MQ=255)                                                                                                                           cGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTAc                                   <  1:114114/135‑1 (MQ=255)                                                                                                                           cGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTAc                                   >  2:114114/1‑135 (MQ=255)                                                                                                                            ggTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGc                    <  3:140139/149‑1 (MQ=255)                                                                                                                                  aCGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAg              <  5:24102/149‑1 (MQ=255)                                                                                                                                    gACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGgc            >  2:270566/1‑149 (MQ=255)                                                                                                                                         gCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCt                                                         >  5:315479/1‑99 (MQ=255)                                                                                                                                         gCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCt                                                         <  6:315479/99‑1 (MQ=255)                                                                                                                                              ccTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTggccggc  <  6:271802/149‑1 (MQ=255)                                                                                                                                               cTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTggccggc  >  6:75862/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                 AGGGCGGCAAGCTGGAGTCGAGCAGTGACCGCAACGCCAGCAACCACCGTGGTGATCTCGGCACCGTCTATGCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGC  >  NC_002947/3138427‑3138716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.