New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3138572 =	37 (0.750)	4 (0.080)	4/250	NT	9.4%	coding (711/1350 nt)	PP_2754	OprD family outer membrane porin
	?	NC_002947	3138643 =	41 (0.850)					coding (782/1350 nt)	PP_2754	OprD family outer membrane porin

GCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAGCGTGCATGCCGGTCTGGCTGCCGGCGCTCATGGCTTCAAGCT  >  NC_002947/3138498‑3138781                                                                                                                                                  |                                                                                                                                           gccggccagcgcctggccgctgtcacgggtgcggtaataattgaggccggtcttcaggctcagctcgctacccaGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTgg                                                                                                                                          >  3:19556‑M1/75‑148 (MQ=255) gccggccagcgcctggccgctgtcacgggtgcggtaataattgaggccggtcttcaggctcagctcgctacccaGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTg                                                                                                                                           >  7:97755‑M1/75‑147 (MQ=255) gCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTgg                                                                                                                                          <  8:122876/148‑1 (MQ=255)           tCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCt                                                                                                                                <  2:261459/148‑1 (MQ=255)             aaGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGa                                                                                                                              <  4:22955/148‑1 (MQ=255)             aaGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGa                                                                                                                              <  3:90080/148‑1 (MQ=255)              aGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGc                                                                                                                            >  4:151170/1‑149 (MQ=255)                            gtggtgTACCTGGGTGGCTATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGcc                                                                                                               <  4:106622/148‑1 (MQ=255)                              ggtgTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGAGCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGACGAGCGGCCTc                                                                                                             >  6:6946/1‑148 (MQ=255)                              ggtgTACCTGGGTGGCGATTACAGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTc                                                                                                             >  8:225111/1‑148 (MQ=255)                                        ggTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCTCCTGCTCAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTAc                                                                                                    <  1:290377/147‑1 (MQ=255)                                          tGGCGCTTACCGCTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCa                                                                                                <  8:13768/149‑1 (MQ=255)                                              gATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCg                                                                                                                  <  5:264075/127‑1 (MQ=255)                                              gATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCg                                                                                                                  >  6:264075/1‑127 (MQ=255)                                              gATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCg                                                                                            >  5:271802/1‑149 (MQ=255)                                                    cGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTAc                                                                                                    <  1:114114/135‑1 (MQ=255)                                                    cGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTAc                                                                                                    >  2:114114/1‑135 (MQ=255)                                                     ggTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGc                                                                                     <  3:140139/149‑1 (MQ=255)                                                           aCGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAg                                                                               <  5:24102/149‑1 (MQ=255)                                                             gACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGgc                                                                             >  2:270566/1‑149 (MQ=255)                                                                  gCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCt                                                                                                                          <  6:315479/99‑1 (MQ=255)                                                                  gCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCt                                                                                                                          >  5:315479/1‑99 (MQ=255)                                                                       ccTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTggccggc                                                                   <  6:271802/149‑1 (MQ=255)                                                                        ccagcggctgcacatggtcgacgctgaagaacgactggttccatacgtcgtcgaggcggctgctgtgcaggcgcTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTggccggc                                                                   >  3:19556‑M2/75‑148 (MQ=255)                                                                        cTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTggccggc                                                                   >  6:75862/1‑148 (MQ=255)                                                                         cagcggctgcacatggtcgacgctgaagaacgactggttccatacgtcgtcgaggcggctgctgtgcaggcgcTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTggccggc                                                                   >  7:97755‑M2/74‑147 (MQ=255)                                                                               cTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGa                                                           >  8:214953/1‑149 (MQ=255)                                                                               cTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCAGGCCGGCCAGATCg                                                            >  1:237265/1‑148 (MQ=255)                                                                                     agcagcCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTg                                                                         >  4:200864/1‑129 (MQ=255)                                                                                     agcagcCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTg                                                                         <  3:200864/129‑1 (MQ=255)                                                                                           cgccTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATg                                               <  3:151170/149‑1 (MQ=255)                                                                                                 gacgacGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAGc                                           <  5:75862/147‑1 (MQ=255)                                                                                                 gacgacGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAGCGt                                         <  2:237265/149‑1 (MQ=255)                                                                                                  aagaacgactggttccatacgtcgtcgaggcggctgctgtgcaggcgcTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAGCGt                                         <  4:19556‑M2/100‑1 (MQ=255)                                                                                                        tATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATc                                                             <  4:75422/122‑1 (MQ=255)                                                                                                        tATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATc                                                             >  3:75422/1‑122 (MQ=255)                                                                                                                     gTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAGCGTGCATGCCGGTCTGGCTGCCg                     >  4:4166/1‑149 (MQ=255)                                                                                                                          tcAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAg                                            >  5:95891/1‑121 (MQ=255)                                                                                                                          tcAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAg                                            <  6:95891/121‑1 (MQ=255)                                                                                                                           cAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGa                                                           >  5:141681/1‑105 (MQ=255)                                                                                                                           cAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGa                                                           <  6:141681/105‑1 (MQ=255)                                                                                                                              cGTCGGCCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAGGACCGGCCGCAATTATTACCGCACCCGGGACAGCGGCCAGGCGCTGGCGGGCCAGATCGACAAGGCCTCATGGAGCGTGCATGCCGGTGGGGCGGCGGgcgcgccgg            >  8:151292/1‑144 (MQ=255)                                                                                                                               gcggctgctgtgcaggcgcTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAGCGTGCATGCCGGTCTGGCTGCCGGCGCTCATgg           <  8:97755‑M2/130‑1 (MQ=255)                                                                                                                                    ccATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAGCGTGCATGCCGGTCTGGCTGCCGGCGCTCATGGCTTc       >  3:67133/1‑148 (MQ=255)                                                                                                                                     cATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAGCGTGCATGCCGGTCTGGCTGCCGGCGCTCAt             <  4:191312/141‑1 (MQ=255)                                                                                                                                     cATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAGCGTGCATGCCGGTCTGGCTGCCGGCGCTCAt             >  3:191312/1‑141 (MQ=255)                                                                                                                                     cATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAGCGTGCATGCCGGTCTGGCTGCCGGCGCTCATGGCTTc       >  5:256597/1‑147 (MQ=255)                                                                                                                                         tgCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAGCGTGCATGCCGGTCTGGCTGCCGGCGCTCATGGCTTCAAGCt  <  7:225111/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                           GCCGGGCGTATCAAGGGCGCCAACGATGTGGTGTACCTGGGTGGCGATTACCGGTTCAACGACCAGCTCACCTTGCGCCTGCACAGCAGCCGCCTCGACGACGTATGGAACCAGTCGTTCTTCAGCGTCGACCATGTGCAGCCGCTGGGTAGCGAGCTGAGCCTGAAGACCGGCCTCAATTATTACCGCACCCGTGACAGCGGCCAGGCGCTGGCCGGCCAGATCGACAACGACTCATGGAGCGTGCATGCCGGTCTGGCTGCCGGCGCTCATGGCTTCAAGCT  >  NC_002947/3138498‑3138781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.