New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3177318 = | 43 (0.870) | 3 (0.060) | 3/244 | NT | 6.3% | intergenic (+9/+61) | PP_2787/PP_2788 | transporter/MerR family transcriptional regulator |
? | NC_002947 | 3177351 = | 48 (1.020) | intergenic (+42/+28) | PP_2787/PP_2788 | transporter/MerR family transcriptional regulator |
GCAAGTGCATGACGGCTTGGTTGAGTTTGAGCTGAGCCTCAAGGATGCTCAGATGCAATGCCAGTTCGAACACCTGGAAAAAGCCCGCTGAATCCGCTCCGCCGCCCCTGAACGGCCATGGCGCCCGGTGCCGTTTTCAGCACGCAGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3177469‑3177318 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATG > NC_002947/3177351‑3177462 GCAAGTGCATGACGGCTTGGTTGAGTTTGAGCTGAGCCTCAAGGATGCTCAGATGCAATGCCAGTTCGAACACCTGGAAAAAGCCCGCTGAATCCGCTCCGCCGCCCCTGAACGGCCATGGCGCCCGGTGCCGTTTTCAGCACGCAGGC > 3:181125/1‑149 GCAAGTGCATGACGGCTTGGTTGAGTTTGAGCTGAGCCTCAAGGATGCTCAGATGCAATGCCAGTTCGAACACCTGGAAAAAGCCCGCTGAATCCGCTCCGCCGCCCCTGAACGGCCATGGCGCCCGGTGCCGTTTTCAGCACACAGGC > 1:45978/1‑149 CCATGGCGCCCGGTGCCGTTTTCAGCACGCAGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATG > 7:174686/1‑149 ATGGCGCCCGGTGCCGTTTTCAGCACGCAGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAA > 3:51676/1‑129 ATGGCGCCCGGTGCCGTTTTCAGCACGCAGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAA < 4:51676/129‑1 GCAAGTGCATGACGGCTTGGTTGAGTTTGAGCTGAGCCTCAAGGATGCTCAGATGCAATGCCAGTTCGAACACCTGGAAAAAGCCCGCTGAATCCGCTCCGCCGCCCCTGAACGGCCATGGCGCCCGGTGCCGTTTTCAGCACGCAGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3177469‑3177318 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATG > NC_002947/3177351‑3177462 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |