New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3177318 =	43 (0.870)	3 (0.060)	3/244	NT	6.3%	intergenic (+9/+61)	PP_2787/PP_2788	transporter/MerR family transcriptional regulator
	?	NC_002947	3177351 =	48 (1.020)					intergenic (+42/+28)	PP_2787/PP_2788	transporter/MerR family transcriptional regulator

TGTCATCCAGCGGCTTCATGACCATTTTGTTGGTCACGCTGATTTCGCCGTGGTTCTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAG  >  NC_002947/3177182‑3177454                                                                                                                                         |                                                                                                                                         tGTCATCCAGCGGCTTCATGACCATTTTGTTGGTCACGCTGATTTCGCCGTGGTTCTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGc                                                                                                                              >  5:76696/1‑149 (MQ=255)   tCATCCAGCGGCTTCATGACCATTTTGTTGGTCACGCTGATTTCGCCGTGGTTCTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCt                                                                                                                             <  2:186120/148‑1 (MQ=255)         aGCGGCTTCATGACCATTTTGTTGGTCACGCTGATTTCGCCGTGGTTCTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACg                                                                                                                      >  3:297015/1‑149 (MQ=255)                  aTGACCATTTTGTTGGTCACGCTGATTTCGCCTTGGGTCTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCC‑GCGTGCTGAAAACGGCACCGGgc                                                                                                             <  3:226624/148‑1 (MQ=255)                   tGACCATTTTGTTGGTCACGCTGATTTCGCCGTGGTTCTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGgcg                                                                                                            >  6:43076/1‑149 (MQ=255)                         catgacggcttggttgagtttgagctgagcctcaaggatgctcagatgcaatgccagttcgaacacctggaaaaagcccgctgaatccgctccgccgcccctgaacggccatGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATgg                                                                                                      >  7:174686‑M1/113‑149 (MQ=255)                             gttgGTCACGCTGATTTCGCCGTGGTTCTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGt                                                                                                  >  1:148301/1‑149 (MQ=255)                                           tttgagctgagcctcaaggatgctcagatgcaatgccagttcgaacacctggaaaaagcccgctgaatccgctccgccgcccctgaacggccatGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCAt                                                                                                        >  3:51676‑M1/95‑129 (MQ=255)                                           tttgagctgagcctcaaggatgctcagatgcaatgccagttcgaacacctggaaaaagcccgctgaatccgctccgccgcccctgaacggccatGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCAt                                                                                                        <  4:51676‑M1/35‑1 (MQ=255)                                              cGCCGTGGTTCTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGgcggagc                                                                                  <  3:93951/148‑1 (MQ=255)                                               gCCGTGGTTCTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGgcggagc                                                                                  <  3:310301/147‑1 (MQ=255)                                               gCCGTGGTTCTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGgcggagc                                                                                  >  4:310301/1‑147 (MQ=255)                                                        cTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCg                                                                        <  4:297015/148‑1 (MQ=255)                                                             ccTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCttt                                                                  >  3:161998/1‑149 (MQ=255)                                                              cTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCtttt                                                                 >  5:80476/1‑149 (MQ=255)                                                               tCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCttttt                                                                >  5:160769/1‑149 (MQ=255)                                                                cGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTc                                                               >  1:113864/1‑149 (MQ=255)                                                                 gATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTcc                                                              <  6:76696/149‑1 (MQ=255)                                                                 gATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTc                                                               <  2:113864/148‑1 (MQ=255)                                                                   ttGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAg                                                            >  1:300564/1‑149 (MQ=255)                                                                          gCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATGCACGGGGATTTTTCAAGgtgtgg                                                      >  2:87692/1‑146 (MQ=255)                                                                           cagccagcAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCg                                                     >  4:181125/1‑148 (MQ=255)                                                                                 gcagTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCa                                                             <  3:239783/134‑1 (MQ=255)                                                                                 gcagTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCa                                                             >  4:239783/1‑134 (MQ=255)                                                                                   agTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCAt                                            <  4:161998/149‑1 (MQ=255)                                                                                       cAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCa                                        >  7:261256/1‑149 (MQ=255)                                                                                            gggCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTGAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCt                                     >  2:256757/1‑147 (MQ=255)                                                                                            gggCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCt                                     >  4:241200/1‑147 (MQ=255)                                                                                                    agcCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCAt                                            >  4:272397/1‑132 (MQ=255)                                                                                                     gcCGGGGGGTTGGGATGTGCCAGGCTAAATCGCGGGGGCGCCTGCGTGCGGAAAACGGCACCGGGCGCCAGGGCCGGTCAGGGGCGGCGGAGCGGATTCAGCGTGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTg                          <  2:225952/149‑1 (MQ=255)                                                                                                     gcCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGc                                         >  3:64528/1‑134 (MQ=255)                                                                                                     gcCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGc                                         <  4:64528/134‑1 (MQ=255)                                                                                                     gcCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATcc                             >  4:236001/1‑146 (MQ=255)                                                                                                     gcCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATcc                             <  3:236001/146‑1 (MQ=255)                                                                                                     gcCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTg                          <  3:285491/149‑1 (MQ=255)                                                                                                      ccGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGa                         <  3:241200/149‑1 (MQ=255)                                                                                                            ggTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCTGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGgctca                   <  6:160769/149‑1 (MQ=255)                                                                                                             gTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGgctcag                  <  2:300564/149‑1 (MQ=255)                                                                                                               ggggCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCCTCAAGGATgctcagat                <  5:28451/149‑3 (MQ=255)                                                                                                                         cAGGCTAAATCGCCGGGGCGCCTGTGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAAc      >  2:45978/1‑149 (MQ=255)                                                                                                                            gCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAg                                                            <  8:192490/92‑1 (MQ=255)                                                                                                                            gCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAg                                                            >  7:192490/1‑92 (MQ=255)                                                                                                                            gCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAAcc     >  1:215621/1‑147 (MQ=255)                                                                                                                             cTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAg  <  5:43076/149‑1 (MQ=255)                                                                                                                                  tCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCt                                     <  1:198630/109‑1 (MQ=255)                                                                                                                                  tCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCt                                     >  2:198630/1‑109 (MQ=255)                                                                                                                                       ggggCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGa                                   >  6:60864/1‑106 (MQ=255)                                                                                                                                       ggggCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGa                                   <  5:60864/106‑1 (MQ=255)                                                                                                                                         |                                                                                                                                         TGTCATCCAGCGGCTTCATGACCATTTTGTTGGTCACGCTGATTTCGCCGTGGTTCTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAG  >  NC_002947/3177182‑3177454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.