| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3177318 = | 43 (0.870) | 3 (0.060) | 3/244 | NT | 6.3% | intergenic (+9/+61) | PP_2787/PP_2788 | transporter/MerR family transcriptional regulator |
| ? | NC_002947 | 3177351 = | 48 (1.020) | intergenic (+42/+28) | PP_2787/PP_2788 | transporter/MerR family transcriptional regulator | |||||
TTTTGTTGGTCACGCTGATTTCGCCGTGGTTCTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCAT > NC_002947/3177206‑3177492 | catgacggcttggttgagtttgagctgagcctcaaggatgctcagatgcaatgccagttcgaacacctggaaaaagcccgctgaatccgctccgccgcccctgaacggccatGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATgg > 7:174686‑M1/113‑149 (MQ=255) gttgGTCACGCTGATTTCGCCGTGGTTCTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGt > 1:148301/1‑149 (MQ=255) tttgagctgagcctcaaggatgctcagatgcaatgccagttcgaacacctggaaaaagcccgctgaatccgctccgccgcccctgaacggccatGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCAt < 4:51676‑M1/35‑1 (MQ=255) tttgagctgagcctcaaggatgctcagatgcaatgccagttcgaacacctggaaaaagcccgctgaatccgctccgccgcccctgaacggccatGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCAt > 3:51676‑M1/95‑129 (MQ=255) cGCCGTGGTTCTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGgcggagc < 3:93951/148‑1 (MQ=255) gCCGTGGTTCTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGgcggagc < 3:310301/147‑1 (MQ=255) gCCGTGGTTCTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGgcggagc > 4:310301/1‑147 (MQ=255) cTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCg < 4:297015/148‑1 (MQ=255) ccTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCttt > 3:161998/1‑149 (MQ=255) cTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCtttt > 5:80476/1‑149 (MQ=255) tCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCttttt > 5:160769/1‑149 (MQ=255) cGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTc > 1:113864/1‑149 (MQ=255) gATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTcc < 6:76696/149‑1 (MQ=255) gATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTc < 2:113864/148‑1 (MQ=255) ttGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAg > 1:300564/1‑149 (MQ=255) gCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATGCACGGGGATTTTTCAAGgtg‑tgg > 2:87692/1‑146 (MQ=255) cagccagcAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCg > 4:181125/1‑148 (MQ=255) gcagTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCa < 3:239783/134‑1 (MQ=255) gcagTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCa > 4:239783/1‑134 (MQ=255) agTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCAt < 4:161998/149‑1 (MQ=255) cAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCa > 7:261256/1‑149 (MQ=255) gggCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTGAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCt > 2:256757/1‑147 (MQ=255) gggCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCt > 4:241200/1‑147 (MQ=255) agcCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCAt > 4:272397/1‑132 (MQ=255) gcCGGGGGGTTGGGATGTGCCAGGCTAAATCGCGGGGGCGCCTGCGTGCGGAAAACGGCACCGGGCGCCAGGGCCGGTCAGGGGCGGCGGAGCGGATTCAGCGTGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTg < 2:225952/149‑1 (MQ=255) gcCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGc < 4:64528/134‑1 (MQ=255) gcCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGc > 3:64528/1‑134 (MQ=255) gcCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑cc < 3:236001/146‑1 (MQ=255) gcCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑cc > 4:236001/1‑146 (MQ=255) gcCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTg < 3:285491/149‑1 (MQ=255) ccGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGa < 3:241200/149‑1 (MQ=255) ggTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCTGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGgctca < 6:160769/149‑1 (MQ=255) gTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGgctcag < 2:300564/149‑1 (MQ=255) ggggCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCCT‑CAAGGATgctcagat < 5:28451/149‑3 (MQ=255) cAGGCTAAATCGCCGGGGCGCCTGTGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCAAACTCAAc > 2:45978/1‑149 (MQ=255) gCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAg > 7:192490/1‑92 (MQ=255) gCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAg < 8:192490/92‑1 (MQ=255) gCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCAAACTCAAcc > 1:215621/1‑147 (MQ=255) cTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCAAACTCAACCAAg < 5:43076/149‑1 (MQ=255) tCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCt < 1:198630/109‑1 (MQ=255) tCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCt > 2:198630/1‑109 (MQ=255) ccatggcgcccggtgccgttttcagcacgcaggcgccATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATg > 7:174686‑M2/38‑149 (MQ=255) ggggCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGa < 5:60864/106‑1 (MQ=255) ggggCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGa > 6:60864/1‑106 (MQ=255) atggcgcccggtgccgttttcagcacgcaggcgccATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCaaa > 3:51676‑M2/36‑129 (MQ=255) atggcgcccggtgccgttttcagcacgcaggcgccATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCaaa < 4:51676‑M2/94‑1 (MQ=255) GCCTGTGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTtgc > 1:45978‑M1/1‑149 (MQ=255) GCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTtgc > 3:181125‑M1/1‑149 (MQ=255) tcGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCAGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATg < 6:281998/137‑1 (MQ=255) gCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCAGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATg > 5:281998/1‑138 (MQ=255) cGTGCTGAAAACGGCACCGGGCGCCATGGCGGTTCAGGGGCGGCGGTGCGGATTCAGCGGGCTTTTTCCAGGTGCTCCTCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTtgct < 1:256757/148‑1 (MQ=255) gCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGc > 6:275949/1‑149 (MQ=255) tGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGgcggagcgga > 3:19322/1‑47 (MQ=255) tGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGgcggagcgga < 4:19322/47‑1 (MQ=255) aaaaCGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCAAACTCAACCAAg > 2:23707/1‑122 (MQ=255) aaaaCGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCACGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCATCCCTTGAGGCTCAGCTCAAACTCAACCAAg < 1:23707/123‑1 (MQ=255) cACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGc > 3:23247/1‑124 (MQ=255) cACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGc < 4:23247/124‑1 (MQ=255) gggCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCAt < 2:148301/149‑1 (MQ=255) | TTTTGTTGGTCACGCTGATTTCGCCGTGGTTCTTTGCCTCGATTGTGCCGCAGCCAGCAGTGCAAGAGGGCGAGCAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTG‑T‑‑TCGAACTGGCATTGCATCTGAGCAT‑CCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCAT > NC_002947/3177206‑3177492 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |