New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3213874 =	38 (0.770)	3 (0.060)	3/246	NT	7.7%	coding (941/1137 nt)	mexC	multidrug RND transporter membrane fusion protein MexC
	?	NC_002947	3213958 =	35 (0.740)					coding (1025/1137 nt)	mexC	multidrug RND transporter membrane fusion protein MexC

ACCGGGGGCCAACCCTGCGGGGCTGCCGACGATCACCTGATCGCCCGGCTCCAGCCCCTCGGTAATCTGCCAGCGCGAGCCTTGCATCACGCCGGTGCGCACCGCGCGTGCCTCGGCGATGCCATTGGTGGCGACCAAGACCCGCGCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3214025‑3213874 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcAGATTACCGAGGGGCTGGAGCCGGGCGATCAGGTGATCGTCGGCAGCCCCGCAGGGTTGGCC  >  NC_002947/3213958‑3214019                                                                                                                                                                                                                        ACCGGGGGCCAACCCTGCGGGGCTGCCGACGATCACCTGATCGCCCGGCTCCAGCCCCTCGGTAATCTGCCAGCGCGAGCCTTGCATCACGCCGGTGCGCACCGCGCGTGCCTCGGCGATGCCATTGGTGGCGACCAAGACCCGCGCCT                                                                   >  2:240662/1‑149                                                                  TCTGCCAGCGCGAGCCTTGCATCACGCCGGTGCGCACCGCGCGTGCCTCGGCGATGCCATTGGTGGCGACCAAGACCCGCGCCTGGCAGATTACCGAGGGGCTGGAGCCGGGCGATCAGGTGATCGTCGGCAGCCCCGCAGGGTTGGCC  >  8:46750/1‑149                                                                        AGCGCGAGCCTTGCATCACGCCGGTGCGCACCGCGCGTGCCTCGGCGATGCCATTGGTGGCGACCAAGACCCGCGCCTGGCAGATTACCGAGGGGCTGGAGCCGGGCGATCAGGTGATCGTCGGCAGCCCCGCAGGGTTG     >  5:81141/1‑140                                                                        AGCGCGAGCCTTGCATCACGCCGGTGCGCACCGCGCGTGCCTCGGCGATGCCATTGGTGGCGACCAAGACCCGCGCCTGGCAGATTACCGAGGGGCTGGAGCCGGGCGATCAGGTGATCGTCGGCAGCCCCGCAGGGTTG     <  6:81141/140‑1                                                                                                                                                                                                                        ACCGGGGGCCAACCCTGCGGGGCTGCCGACGATCACCTGATCGCCCGGCTCCAGCCCCTCGGTAATCTGCCAGCGCGAGCCTTGCATCACGCCGGTGCGCACCGCGCGTGCCTCGGCGATGCCATTGGTGGCGACCAAGACCCGCGCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3214025‑3213874 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcAGATTACCGAGGGGCTGGAGCCGGGCGATCAGGTGATCGTCGGCAGCCCCGCAGGGTTGGCC  >  NC_002947/3213958‑3214019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.