New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3428206 =	48 (0.970)	3 (0.060)	3/248	NT	6.2%	coding (117/207 nt)	PP_3043	hypothetical protein
	?	NC_002947	3428250 =	45 (0.940)					coding (161/207 nt)	PP_3043	hypothetical protein

GCTGGCCTTGATCCGCTCGGGCACCAGAAGCCCCGAACGTGTGGAGATGTAGCGGCCGCTCACAGCCCCTTACCCCCATGGTAAAGCCGAACCACGCGGGAACGCGGGCCAGCGGACTGGGACAATTCGGTGCGGATCAGGTCGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3428355‑3428206 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCGCGTTCCCGCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGA  >  NC_002947/3428250‑3428396                                                                                                                                                                                                                                                                                                           GCTGGCCTTGATCCGCTCGGGCACCAGAAGCCCCGAACGTGTGGAGATGTAGCGGCCGCTCACAGCCCCTTACCCCCATGGTAAAGCCGAACCACGCGGGAACGCGGGCCAGCGGACTGGGACAATTCGGTGCGGATCAGGTCGCGGGC                                                                                                                                                      <  1:230964/149‑1  CTGGCCTTGATCCGCTCGGGCACCAGAAGCCCCGAACGTGTGGAGATGTAGCGGCCGCTCACAGCCCCTTACCCCCATGGTAAAGCCGAACCACGCGGGAACGCGGGCCAGCGGACTGGGACAATTCGGTGCGGATCAGGTCGCGGGCC                                                                                                                                                     >  1:158551/1‑149  CTGGCCTTGATCCGCTCGGGCACCAGAAGCCCCGAACGTGTGGAGATGTAGCGGCCGCTCACAGCCCCTTACCCCCATGGTAAAGCCGAACCACGCGGGAACGCGGGCCAGCGGACTGGGACAATTCGGTGCGGATCAGGTCGCGGGCC                                                                                                                                                     >  2:317526/1‑149                                                                                                       ctCGGGGCCGCGGACTGGGACAATTCGGTGCGGATCATGTCGCGGGCCCGCGTTCCCGCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGC                                                         <  6:223301/138‑1                                                                                                       CGCGGGCCAGCGGACTGGGACAATTCGGTGCGGATCAGGTCGCGGGCCCGCGTTCCAGCGTGGTTCGGCTTAACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACCTCTCCACACGTTCGGGGCTTCTGGTGCCCGAGC                                                         >  5:223301/1‑140                                                                                                          GGGCCAGCGGACTGGGACAATTCGGTGCGGATCAGGTCGCGGGCCCGCGTTCCCGCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGC                                               >  2:35552/1‑147                                                                                                                                                     CCCGCGTTCCCGCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGA  <  1:35552/149‑1                                                                                                                                                     CCCGCGTTCCCGCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAA                         >  7:504/1‑126                                                                                                                                                      CCGCGTTCCCGCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCC                                                                                     <  3:96491/65‑1                                                                                                                                                      CCGCGTTCCCGCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCC                                                                                     >  4:96491/1‑65                                                                                                                                                                                                                                                                                                           GCTGGCCTTGATCCGCTCGGGCACCAGAAGCCCCGAACGTGTGGAGATGTAGCGGCCGCTCACAGCCCCTTACCCCCATGGTAAAGCCGAACCACGCGGGAACGCGGGCCAGCGGACTGGGACAATTCGGTGCGGATCAGGTCGCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3428355‑3428206 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCGCGTTCCCGCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGA  >  NC_002947/3428250‑3428396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.