New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3711885 =	32 (0.650)	4 (0.080)	4/248	NT	10.8%	coding (96/282 nt)	paaB	ring 1,2‑phenylacetyl‑CoA epoxidase regulatory subunit
	?	NC_002947	3711921 =	35 (0.730)					coding (60/282 nt)	paaB	ring 1,2‑phenylacetyl‑CoA epoxidase regulatory subunit

CACAAACATGTCGGCAGCGTGCACGCCGCCGATGCCGCCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3711926‑3711885 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGTTGCTTGCGCGCATAGGCCACTGCGGCCTCGCGTACCCAG  >  NC_002947/3711921‑3712066                                                                                                                                                                                              CACAAACATGTCGGCAGCGTGCACGCCGCCGATGCCGCCATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGT                                         >  8:291436/1‑149  ACAAACATGTCGGCAGCGTGCACGCCGCCGATGCCGCCATGTTTGTGGTTAAGGCCCTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTT                                                <  1:106313/141‑1  ACAAACATGTCGGCAGCGTGCACGCCGCCGATGCCGCCATGTTTGTGGTTAAGGCCATGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTT                                                >  2:106313/1‑141                           CGCCGATGCCGCCATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGTTGCTTGCGCGCATAGGCCACTGCGGC               <  7:291436/149‑1                                        ATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGTTGCTTGCGCGCATAGGCCACTGCGGCCTCGCGTANCCAG  <  5:263338/149‑1                                                                                                                                                                                              CACAAACATGTCGGCAGCGTGCACGCCGCCGATGCCGCCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3711926‑3711885 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGTTGCTTGCGCGCATAGGCCACTGCGGCCTCGCGTACCCAG  >  NC_002947/3711921‑3712066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.