New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3711885 =	32 (0.650)	4 (0.080)	4/248	NT	10.8%	coding (96/282 nt)	paaB	ring 1,2‑phenylacetyl‑CoA epoxidase regulatory subunit
	?	NC_002947	3711921 =	35 (0.730)					coding (60/282 nt)	paaB	ring 1,2‑phenylacetyl‑CoA epoxidase regulatory subunit

GCATGGCGATAGACCTTGTCGTCCGAGGGGGCGAACAGCGGGTCTTTCTCGTCGGGAGAGGAGGCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGTT  >  NC_002947/3711739‑3712028                                                                                                                                                   |                                                                                                                                                ctggntacgcgaggccgcagtggcctatgcgcgcaagcaacagaacaagaacgccgcctgagcggcgatagatgcggagatcgaaaatgtctgtctggaccctctacgaagtgttcgtgcgcagcaagcacggccttaaccacaaaCAt                                                                                                                                               <  5:263338‑M1/3‑1 (MQ=255)              gccgcagtggcctatgcgcgcaagcaacagaacaagaacgccgcctgagcggcgatagatgcggagatcgaaaatgtctgtctggaccctctacgaagtgttcgtgcgcagcaagcacggccttaaccacaaaCATGGCGGCATcggcg                                                                                                                                  <  7:291436‑M1/16‑1 (MQ=255)                          aGGGGGCGAACAGCGGGTCTTTCTCGTCGGGAGAGGAGGCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTg                                                                                                                      >  1:191514/1‑149 (MQ=255)                                  aaCAGCGGGTCTTTCTCGTCGGGAGAGGAGGCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATg                                                                                                              >  5:149747/1‑149 (MQ=255)                                   aCAGCGGGTCTTTCTCGTCGGGAGAGGAGGCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGt                                                                                                             <  7:73395/149‑1 (MQ=255)                                    cAGCGGGTCTTTCTCGTCGGGAGAGGAGGCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGtt                                                                                                            <  2:191514/149‑1 (MQ=255)                                        acagaacaagaacgccgcctgagcggcgatagatgcggagatcgaaaatgtctgtctggaccctctacgaagtgttcgtgcgcagcaagcacggccttaaccacaaaCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTtgtg                                                                                                        >  8:291436‑M1/108‑149 (MQ=255)                                          gTCTTTCTCGTCGGGAGAGGAGGCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCggcggc                                                                                                                                <  2:109637/123‑1 (MQ=255)                                               aagaacgccgcctgagcggcgatagatgcggagatcgaaaatgtctgtctggaccctctacgaagtgttcgtgcgcagcaagcatggccttaaccacaaaCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTtgt                                                                                                         >  2:106313‑M1/101‑141 (MQ=255)                                               aagaacgccgcctgagcggcgatagatgcggagatcgaaaatgtctgtctggaccctctacgaagtgttcgtgcgcagcaagcagggccttaaccacaaaCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTtgt                                                                                                         <  1:106313‑M1/41‑1 (MQ=255)                                                 tcgtcgGGAGAGGAGGCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGATCTCGCTGGACTTCTAAATATAAATAAAAAAATCGGCGGCGTGCACGCTGCCGACa                                                                                                                >  6:67238/1‑132 (MQ=255)                                                 tcgtcgGGAGAGGAGGCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACa                                                                                                                <  5:67238/132‑1 (MQ=255)                                                   gtcgGGAGAGGAGGCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGt                                                                                             >  1:125806/1‑149 (MQ=255)                                                       ggAGAGGAGGCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGtgctt                                                                                         >  5:157082/1‑149 (MQ=255)                                                                gCGGTGATCAGCGCCGAAGGCACCACCGACATACTCACACGTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTaatg                                                                                                 <  2:230137/132‑3 (MQ=255)                                                                gCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATAGGCCGCGTGCACGCTGCCGACATGTTTGTGGTTAAgg                                                                                                 >  1:230137/1‑132 (MQ=255)                                                                  ggTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACg                                                                               >  3:90383/1‑148 (MQ=255)                                                                     gATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAaca                                                                           >  3:69321/1‑149 (MQ=255)                                                                           cgcCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGt                                                                     <  6:149747/149‑1 (MQ=255)                                                                            gcCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCg                                                                      >  3:58384/1‑147 (MQ=255)                                                                            gcCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTa                                                                    <  6:157082/149‑1 (MQ=255)                                                                                    caccacCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTcc                                                            <  4:69321/149‑1 (MQ=255)                                                                                                  tCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTc                                              >  7:136587/1‑149 (MQ=255)                                                                                                    acacCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTATCGATGGCCATGGCGGCATCGGCGGCGTGCAGGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCg                                             >  7:134855/1‑148 (MQ=255)                                                                                                           cGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTcc                                       <  8:136587/147‑1 (MQ=255)                                                                                                              tACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGTCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCTCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGa                                            <  3:259653/139‑1 (MQ=255)                                                                                                                    gggTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCt                                                                                                                       <  5:289419/58‑1 (MQ=255)                                                                                                                     ggTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATcgcc                           >  5:31547/1‑149 (MQ=255)                                                                                                                       tgtAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGTACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATcgccgc                         >  3:135608/1‑149 (MQ=255)                                                                                                                            agCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAgg                    >  6:114348/1‑149 (MQ=255)                                                                                                                               tCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAggcgg                 >  7:268576/1‑149 (MQ=255)                                                                                                                                 gcgGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAggcggc                <  6:31547/148‑1 (MQ=255)                                                                                                                                     gCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCt           <  8:134855/149‑1 (MQ=255)                                                                                                                                      cGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCtt          <  5:114348/149‑1 (MQ=255)                                                                                                                                          ctcGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCAt                                   <  7:13206/120‑1 (MQ=255)                                                                                                                                          ctcGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCAt                                   >  8:13206/1‑120 (MQ=255)                                                                                                                                          ctcGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGtt       <  8:268576/148‑1 (MQ=255)                                                                                                                                              aTGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTc                                                                       <  3:256646/80‑1 (MQ=255)                                                                                                                                              aTGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTc                                                                       >  4:256646/1‑80 (MQ=255)                                                                                                                                              aTGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAggcggc                >  3:213850/1‑135 (MQ=255)                                                                                                                                              aTGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAggcggc                <  4:213850/135‑1 (MQ=255)                                                                                                                                              aTGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGtt  <  4:90383/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                GCATGGCGATAGACCTTGTCGTCCGAGGGGGCGAACAGCGGGTCTTTCTCGTCGGGAGAGGAGGCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGTT  >  NC_002947/3711739‑3712028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.