New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3711885 =	32 (0.650)	4 (0.080)	4/248	NT	10.8%	coding (96/282 nt)	paaB	ring 1,2‑phenylacetyl‑CoA epoxidase regulatory subunit
	?	NC_002947	3711921 =	35 (0.730)					coding (60/282 nt)	paaB	ring 1,2‑phenylacetyl‑CoA epoxidase regulatory subunit

ACAGCGGGTCTTTCTCGTCGGGAGAGGAGGCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGTTGCTTGCGCGCATAGGCCACTGCGGCCTCGCGTACCCAG  >  NC_002947/3711773‑3712066                                                                                                                                                     |                                                                                                                                                  aCAGCGGGTCTTTCTCGTCGGGAGAGGAGGCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGt                                                                                                                                                   <  7:73395/149‑1 (MQ=255)  cAGCGGGTCTTTCTCGTCGGGAGAGGAGGCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGtt                                                                                                                                                  <  2:191514/149‑1 (MQ=255)      acagaacaagaacgccgcctgagcggcgatagatgcggagatcgaaaatgtctgtctggaccctctacgaagtgttcgtgcgcagcaagcacggccttaaccacaaaCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTtgtg                                                                                                                                              >  8:291436‑M1/108‑149 (MQ=255)             aagaacgccgcctgagcggcgatagatgcggagatcgaaaatgtctgtctggaccctctacgaagtgttcgtgcgcagcaagcatggccttaaccacaaaCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTtgt                                                                                                                                               >  2:106313‑M1/101‑141 (MQ=255)             aagaacgccgcctgagcggcgatagatgcggagatcgaaaatgtctgtctggaccctctacgaagtgttcgtgcgcagcaagcagggccttaaccacaaaCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTtgt                                                                                                                                               <  1:106313‑M1/41‑1 (MQ=255)                 gtcgGGAGAGGAGGCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGt                                                                                                                                   >  1:125806/1‑149 (MQ=255)                     ggAGAGGAGGCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGtgctt                                                                                                                               >  5:157082/1‑149 (MQ=255)                              gCGGTGATCAGCGCCGAAGGCACCACCGACATACTCACACGTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTaatg                                                                                                                                       <  2:230137/132‑3 (MQ=255)                              gCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATAGGCCGCGTGCACGCTGCCGACATGTTTGTGGTTAAgg                                                                                                                                       >  1:230137/1‑132 (MQ=255)                                ggTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACg                                                                                                                     >  3:90383/1‑148 (MQ=255)                                   gATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAaca                                                                                                                 >  3:69321/1‑149 (MQ=255)                                         cgcCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGt                                                                                                           <  6:149747/149‑1 (MQ=255)                                          gcCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCg                                                                                                            >  3:58384/1‑147 (MQ=255)                                          gcCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTa                                                                                                          <  6:157082/149‑1 (MQ=255)                                                  caccacCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTcc                                                                                                  <  4:69321/149‑1 (MQ=255)                                                                tCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTc                                                                                    >  7:136587/1‑149 (MQ=255)                                                                  acacCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTATCGATGGCCATGGCGGCATCGGCGGCGTGCAGGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCg                                                                                   >  7:134855/1‑148 (MQ=255)                                                                         cGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTcc                                                                             <  8:136587/147‑1 (MQ=255)                                                                            tACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGTCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCTCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGa                                                                                  <  3:259653/139‑1 (MQ=255)                                                                                   ggTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATcgcc                                                                 >  5:31547/1‑149 (MQ=255)                                                                                     tgtAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGTACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATcgccgc                                                               >  3:135608/1‑149 (MQ=255)                                                                                          agCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAgg                                                          >  6:114348/1‑149 (MQ=255)                                                                                             tCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAggcgg                                                       >  7:268576/1‑149 (MQ=255)                                                                                               gcgGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAggcggc                                                      <  6:31547/148‑1 (MQ=255)                                                                                                   gCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCt                                                 <  8:134855/149‑1 (MQ=255)                                                                                                    cGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCtt                                                <  5:114348/149‑1 (MQ=255)                                                                                                        ctcGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCAt                                                                         >  8:13206/1‑120 (MQ=255)                                                                                                        ctcGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCAt                                                                         <  7:13206/120‑1 (MQ=255)                                                                                                        ctcGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGtt                                             <  8:268576/148‑1 (MQ=255)                                                                                                           cacaaacatgtcggcagcgtgcacgccgccgatgccgccatgTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGt                                         >  8:291436‑M2/43‑149 (MQ=255)                                                                                                            acaaacatgtcggcagcgtgcacgccgccgatgccgccatgTTTGTGGTTAAGGCCCTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCtt                                                <  1:106313‑M2/100‑1 (MQ=255)                                                                                                            acaaacatgtcggcagcgtgcacgccgccgatgccgccatgTTTGTGGTTAAGGCCATGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCtt                                                >  2:106313‑M2/42‑141 (MQ=255)                                                                                                            aTGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTc                                                                                                             >  4:256646/1‑80 (MQ=255)                                                                                                            aTGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTc                                                                                                             <  3:256646/80‑1 (MQ=255)                                                                                                            aTGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAggcggc                                                      <  4:213850/135‑1 (MQ=255)                                                                                                            aTGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAggcggc                                                      >  3:213850/1‑135 (MQ=255)                                                                                                            aTGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGtt                                        <  4:90383/149‑1 (MQ=255)                                                                                                                     gcggcATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGTTGCTTgcgcg                               >  6:238885/1‑149 (MQ=255)                                                                                                                           tCGGCAGCGTGCACGCCGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCt                                           >  6:239614/1‑131 (MQ=255)                                                                                                                           tCGGCAGCGTGCACGCCGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCt                                           <  5:239614/131‑1 (MQ=255)                                                                                                                                  cgTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGTTGCTTGCGCGCATAGGCCACTGc                  >  8:24592/1‑149 (MQ=255)                                                                                                                                   gtgtACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGTTGCTTGCGCGCATAGGCCACTGCg                 <  4:135608/149‑1 (MQ=255)                                                                                                                                   gTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGTTGCTTGCGCGCATAGGCCACTGCg                 >  6:263338/1‑149 (MQ=255)                                                                                                                                     cgccgatgccgccatgTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGTTGCTTGCGCGCATAGGCCACTGCGGc               <  7:291436‑M2/133‑1 (MQ=255)                                                                                                                                             ccGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGTTGCTTGCGCGCATAGGCCACTGCGGCCTCGCGTa       >  3:246776/1‑149 (MQ=255)                                                                                                                                              cGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGTTGCTTGCGCGCATAGGCCACTGCGGCCTCGCGTAc      >  7:281122/1‑149 (MQ=255)                                                                                                                                                  atgTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGTTGCTTGCGCGCATAGGCCACTGCGGCCTCGCGTANCCAg  <  5:263338‑M2/146‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  ACAGCGGGTCTTTCTCGTCGGGAGAGGAGGCGGTGATCAGCGCCGAAGGCACCACCCACAGACTCACACCTTCGCTACGGCGGGTGTAGAGCTCGCGGGCGTTCTCGATGGCCATGGCGGCATCGGCGGCGTGCACGCTGCCGACATGTTTGTGGTTAAGGCCGTGCTTGCTGCGCACGAACACTTCGTAGAGGGTCCAGACAGACATTTTCGATCTCCGCATCTATCGCCGCTCAGGCGGCGTTCTTGTTCTGTTGCTTGCGCGCATAGGCCACTGCGGCCTCGCGTACCCAG  >  NC_002947/3711773‑3712066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.