| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3862763 = | 76 (1.540) | 4 (0.080) | 4/246 | NT | 5.8% | coding (1686/3282 nt) | PP_3413 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 3862825 = | 58 (1.220) | coding (1748/3282 nt) | PP_3413 | two‑component system sensor histidine kinase/response regulator | |||||
TCATGGTGGCCAGGAAGGTGCTTTTGGTCTGGCTGGCCTGTTCGGCATCGTCCTTGGCCTGGCGTAACTGTTCCAGCAGCCCGCGGCTCAGCGCGAGCTGTGCCTGAAGCGCGTGCTGTGCCTCGGTGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3862896‑3862763‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTGATCGGTCTGCTGGAACTGGCCCTGGAAGATAGCCGCAGCGGCC > NC_002947/3862825‑3862971 TCATGGTGGCCAGGAAGGTGCTTTTGGTCTGGCTGGCCTGTTCGGCATCGTCCTTGGCCTGGCGTAACTGTTCCAGCAGCCCGCGGCTCAGCGCGAGCTGTGCCTGAAGCGCGTGCTGTGCCTCGGTGCGCTGG > 3:202905/1‑134TCATGGTGGCCAGGAAGGTGCTTTTGGTCTGGCTGGCCTGTTCGGCATCGTCCTTGGCCTGGCGTAACTGTTCCAGCAGCCCGCGGCTCAGCGCGAGCTGTGCCTGAAGCGCGTGCTGTGCCTCGGTGCGCTGG < 4:202905/134‑1 GTTCCAGCAGCCCGCGGCTCAGCGCGAGCTGTGCCTGAAGCGCGTGCTGTGCCTCGGTGCGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCC > 2:29887/1‑149 CCAGCAGCCCGCGGCTCAGCGCGAGCTGTGCCTGAAGCGCGTGCTGTGCCTCGGTGCGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCC > 7:275594/1‑104 CCAGCAGCCCGCGGCTCAGCGCGAGCTGTGCCTGAAGCGCGTGCTGTGCCTCGGTGCGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCC < 8:275594/104‑1 CGCGAGCTGTGCCTGAAGCGCGTGCTGAGCCGCGGGCTGCTGGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTGAT > 2:7485/1‑149 CTGTAACACGTACGCCAGGCCAAGGACGATGCCGAACACGCCAGCCACACCACAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTGATCCGGCTGCTGGAACTGGCCCTGGAAGATAGCCGCAGC < 6:267454/147‑1 GGAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTGATCGGTCTGCTGGAACTGGCCCTGGAAGATAGCCGCAGCGGCC > 6:306929/1‑149 TCATGGTGGCCAGGAAGGTGCTTTTGGTCTGGCTGGCCTGTTCGGCATCGTCCTTGGCCTGGCGTAACTGTTCCAGCAGCCCGCGGCTCAGCGCGAGCTGTGCCTGAAGCGCGTGCTGTGCCTCGGTGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3862896‑3862763‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggAACAGTTACGCCAGGCCAAGGACGATGCCGAACAGGCCAGCCAGACCAAAAGCACCTTCCTGGCCACCATGAGCCATGAGATCCGCACCCCGATGAATGCCGTGATCGGTCTGCTGGAACTGGCCCTGGAAGATAGCCGCAGCGGCC > NC_002947/3862825‑3862971 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |