New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4186187	34 (0.690)	3 (0.060)	3/242	NT	9.4%	intergenic (+103/‑467)	PP_3682/PP_3683	hypothetical protein/hypothetical protein
	?	NC_002947	= 4186222	26 (0.560)					intergenic (+138/‑432)	PP_3682/PP_3683	hypothetical protein/hypothetical protein

ATCTGAGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4186079‑4186187 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagggcGATCGCGTCCGCTTAAAAATGCGCGGACACAAAATGCCCTTAAAGCTGGAGTTCGGAAGGAGAGTCCGCTGGACGCACCTAGGTAAAGCACCCGCTGGAGGGGCGCTCTCGGTTAAGGTCGGAGAAAACCTAAGTGCCT  <  NC_002947/4186222‑4186084                                                                                                                                                                                                                                                          ATCTGAGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCGATCGCGTCCGCTTAAAAATGCGCGGACACAAAATGCCCT                                                                                                     >  4:282309/1‑149      AGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCGATCGCGTCCGCTTAAAAATGCGCGGACACAAAATGCCCTTA                                                                                                   <  3:282309/146‑1        GCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCGATCGCGTCCGCTTAAAAATGCGCGGACACAAAATGCCCTTAAAGCT                                                                                              <  4:244046/149‑1                                                                                                       TAAGGGCGATCGCGTCCGCTTAAAAATGCGCGGACACAAAATGCCCTTAAAGCTGGAGTTCGGAAGGAGAGTCCGCTGGACGCACCTAGGTAAAGCACCCGCTGGAGGGGCGCTCTCGGTTAAGGTCGGAGAAAACCTAAGTGCCT  >  6:63931/1‑146                                                                                                                                                                                                                                                          ATCTGAGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4186079‑4186187 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagggcGATCGCGTCCGCTTAAAAATGCGCGGACACAAAATGCCCTTAAAGCTGGAGTTCGGAAGGAGAGTCCGCTGGACGCACCTAGGTAAAGCACCCGCTGGAGGGGCGCTCTCGGTTAAGGTCGGAGAAAACCTAAGTGCCT  <  NC_002947/4186222‑4186084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.