New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4186187	34 (0.690)	3 (0.060)	3/242	NT	9.4%	intergenic (+103/‑467)	PP_3682/PP_3683	hypothetical protein/hypothetical protein
	?	NC_002947	= 4186222	26 (0.560)					intergenic (+138/‑432)	PP_3682/PP_3683	hypothetical protein/hypothetical protein

AGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAACTGCTGCCGCATCAGCAGGTGCCTGCC  >  NC_002947/4186084‑4186355                                                                                                                                           |                                                                                                                                      aGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCgccctta                                                                                                                                >  6:63931‑M2/1‑139 (MQ=255)   gCACTTAGGTTCTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCACCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTc                                                                                                                           <  1:209792/149‑1 (MQ=255)           gTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTc                                                                                                                   >  4:267752/1‑149 (MQ=255)             tttCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGt                                                                                                                            <  1:126483/138‑1 (MQ=255)                       cTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTTGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACg                                                                                                       <  4:13404/149‑1 (MQ=255)                       cTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACg                                                                                                       >  3:13404/1‑149 (MQ=255)                            ccGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGct                                                                                                  >  7:77234/1‑149 (MQ=255)                             cGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGctc                                                                                                 <  8:77234/149‑1 (MQ=255)                                     ccccTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTATAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCAAACGGGGCTCTTATCCg                                                                                          >  2:133762/1‑148 (MQ=255)                                              cGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCa                                                                                <  4:216053/149‑1 (MQ=255)                                                     tttACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGcc                                                                           >  2:137588/1‑147 (MQ=255)                                                     tttACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGcc                                                                           >  1:274466/1‑147 (MQ=255)                                                        aCCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTc                                                                                                                           >  6:312794/1‑96 (MQ=255)                                                        aCCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTc                                                                                                                           <  5:312794/96‑1 (MQ=255)                                                                     cAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGc                                                         <  3:182234/149‑1 (MQ=255)                                                                              ctcCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAg                                                                        <  3:12591/125‑1 (MQ=255)                                                                              ctcCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAg                                                                        >  4:12591/1‑125 (MQ=255)                                                                                 cTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCt                                                <  1:137588/146‑1 (MQ=255)                                                                                  ttCCTAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTc                                                                 <  1:62542/128‑1 (MQ=255)                                                                                  ttCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGcc                                            >  2:174442/1‑149 (MQ=255)                                                                                  ttCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCATTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTc                                                                 >  2:62542/1‑128 (MQ=255)                                                                                     cGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAAt                                                           <  1:38097/131‑1 (MQ=255)                                                                                     cGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAAt                                                           >  2:38097/1‑131 (MQ=255)                                                                                             aGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCgcccttaaagctggagttcggaaggagagtccgctggacgcacctaggtaaagcacccgctggaggggcgctctcggttaaggtcggagaaaacctaagtgc                                 <  4:244046‑M2/149‑103 (MQ=255)                                                                                                tttAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGt                               >  4:240470/1‑148 (MQ=255)                                                                                                  tAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCgcccttaaagctggagttcggaaggagagtccgctggacgcacctaggtaaagcacccgctggaggggcgctctcggttaaggtcggagaaaacctaagtgcct                               <  3:282309‑M2/146‑105 (MQ=255)                                                                                                   aaGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAAc                            <  3:240470/148‑1 (MQ=255)                                                                                                    aGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCgcccttaaagctggagttcggaaggagagtccgctggacgcacctaggtaaagcacccgctggaggggcgctctcggttaaggtcggagaaaacctaagtgcctcagat                          >  4:282309‑M2/1‑40 (MQ=255)                                                                                                            ttGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAACTGCTGCCGc                   <  3:267752/148‑1 (MQ=255)                                                                                                                    gcgcATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAACTGCTGCCGCATCAGCAgg          >  6:45347/1‑149 (MQ=255)                                                                                                                      gcATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAACTGCTGCCGCATCAGCAGGtg        >  7:32270/1‑149 (MQ=255)                                                                                                                       cATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAActgctg                       <  2:101114/133‑1 (MQ=255)                                                                                                                       cATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAActgctg                       >  1:101114/1‑133 (MQ=255)                                                                                                                             tAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAACTGCTGCCGCATCAGCAGGtgcctgcc  <  2:274466/148‑1 (MQ=255)                                                                                                                                           |                                                                                                                                      AGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAACTGCTGCCGCATCAGCAGGTGCCTGCC  >  NC_002947/4186084‑4186355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.