New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4186187	34 (0.690)	3 (0.060)	3/242	NT	9.4%	intergenic (+103/‑467)	PP_3682/PP_3683	hypothetical protein/hypothetical protein
	?	NC_002947	= 4186222	26 (0.560)					intergenic (+138/‑432)	PP_3682/PP_3683	hypothetical protein/hypothetical protein

ACGAAGGACTACGCCACATACGGCTGGAGCCGCATCTGAGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAACTG  >  NC_002947/4186046‑4186331                                                                                                                                              |                                                                                                                                                 aCGAAGGACTACGCCACATACGGCTGGAGCCGCATCTGAGGAACTTAGGTTTTCTCCTACCTTAACCGAGAGCGCCCCTCCTCTGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTtgt                                                                                                                                           <  1:94034/149‑1 (MQ=255)         cTACGCCACATACGGCTGGAGCCGCATCTGAGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCgcgc                                                                                                                                   <  8:111190/149‑1 (MQ=255)               cacaTACGGCTGGAGCCGCATCTGAGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCAtttt                                                                                                                              >  5:63931/1‑148 (MQ=255)                 caTACGGCTGGAGCCGCATCTGAGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGAGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCAttttt                                                                                                                             >  4:182234/1‑147 (MQ=255)                   tACGGCTGGAGCCGCATCTGAGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGc                                                                                                                         <  7:261333/149‑1 (MQ=255)                      ggCTGGAGCCGCATCTGAGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGa                                                                                                                      <  3:77061/149‑1 (MQ=255)                       gCTGGAGCCGCATCTGAGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGAc                                                                                                                     <  7:37803/149‑1 (MQ=255)                            aGCCGCATCTGAGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGAt                                                                                                                <  1:184827/149‑1 (MQ=255)                                 cATCTGAGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGa                                                                                                                 <  6:246272/143‑1 (MQ=255)                                 cATCTGAGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGa                                                                                                                 >  5:246272/1‑143 (MQ=255)                                  aTCTGAGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCgatcgcgtccgcttaaaaatgcgcggacacaaaatgccct                                                                                                          >  4:282309‑M1/1‑109 (MQ=255)                                       aGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCgatcgcgtccgcttaaaaatgcgcggacacaaaatgccctta                                                                                                        <  3:282309‑M1/146‑43 (MQ=255)                                       aGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCgccctta                                                                                                        >  6:63931‑M2/1‑139 (MQ=255)                                         gCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCgatcgcgtccgcttaaaaatgcgcggacacaaaatgcccttaaagct                                                                                                   <  4:244046‑M1/149‑48 (MQ=255)                                         gCACTTAGGTTCTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCACCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTc                                                                                                   <  1:209792/149‑1 (MQ=255)                                                 gTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTc                                                                                           >  4:267752/1‑149 (MQ=255)                                                   tttCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGt                                                                                                    <  1:126483/138‑1 (MQ=255)                                                             cTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTTGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACg                                                                               <  4:13404/149‑1 (MQ=255)                                                             cTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACg                                                                               >  3:13404/1‑149 (MQ=255)                                                                  ccGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGct                                                                          >  7:77234/1‑149 (MQ=255)                                                                   cGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGctc                                                                         <  8:77234/149‑1 (MQ=255)                                                                           ccccTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTATAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCAAACGGGGCTCTTATCCg                                                                  >  2:133762/1‑148 (MQ=255)                                                                                    cGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCa                                                        <  4:216053/149‑1 (MQ=255)                                                                                           tttACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGcc                                                   >  1:274466/1‑147 (MQ=255)                                                                                           tttACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGcc                                                   >  2:137588/1‑147 (MQ=255)                                                                                              aCCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTc                                                                                                   >  6:312794/1‑96 (MQ=255)                                                                                              aCCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTc                                                                                                   <  5:312794/96‑1 (MQ=255)                                                                                                           cAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGc                                 <  3:182234/149‑1 (MQ=255)                                                                                                                    ctcCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAg                                                >  4:12591/1‑125 (MQ=255)                                                                                                                    ctcCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAg                                                <  3:12591/125‑1 (MQ=255)                                                                                                                       cTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCt                        <  1:137588/146‑1 (MQ=255)                                                                                                                        ttCCTAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTc                                         <  1:62542/128‑1 (MQ=255)                                                                                                                        ttCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGcc                    >  2:174442/1‑149 (MQ=255)                                                                                                                        ttCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCATTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTc                                         >  2:62542/1‑128 (MQ=255)                                                                                                                           cGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAAt                                   >  2:38097/1‑131 (MQ=255)                                                                                                                           cGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAAt                                   <  1:38097/131‑1 (MQ=255)                                                                                                                                   aGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCgcccttaaagctggagttcggaaggagagtccgctggacgcacctaggtaaagcacccgctggaggggcgctctcggttaaggtcggagaaaacctaagtgc         <  4:244046‑M2/149‑103 (MQ=255)                                                                                                                                      tttAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGt       >  4:240470/1‑148 (MQ=255)                                                                                                                                        tAAGGGCgatcgcgtccgcttaaaaatgcgcggacacaaaatgcccttaaagctggagttcggaaggagagtccgctggacgcacctaggtaaagcacccgctggaggggcgctctcggttaaggtcggagaaaacctaagtgcct       >  6:63931‑M1/1‑7 (MQ=255)                                                                                                                                        tAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCgcccttaaagctggagttcggaaggagagtccgctggacgcacctaggtaaagcacccgctggaggggcgctctcggttaaggtcggagaaaacctaagtgcct       <  3:282309‑M2/146‑105 (MQ=255)                                                                                                                                         aaGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAAc    <  3:240470/148‑1 (MQ=255)                                                                                                                                          aGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCgcccttaaagctggagttcggaaggagagtccgctggacgcacctaggtaaagcacccgctggaggggcgctctcggttaaggtcggagaaaacctaagtgcctcagat  >  4:282309‑M2/1‑40 (MQ=255)                                                                                                                                              |                                                                                                                                                 ACGAAGGACTACGCCACATACGGCTGGAGCCGCATCTGAGGCACTTAGGTTTTCTCCGACCTTAACCGAGAGCGCCCCTCCAGCGGGTGCTTTACCTAGGTGCGTCCAGCGGACTCTCCTTCCGAACTCCAGCTTTAAGGGCATTTTGTGTCCGCGCATTTTTAAGCGGACGCGATCGCCCTTATCGTCATGATTTCCATGCGCCAACGGGGCTCTTATCCGATACCGTTCAAAGCCTAGGTCGTTCAGGAATGCCTGCAACCTGGCCCGTGAGATCGGGTAACTG  >  NC_002947/4186046‑4186331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.