New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4405582	40 (0.810)	4 (0.080)	4/246	NT	8.9%	coding (634/672 nt)	PP_3887	hypothetical protein
	?	NC_002947	= 4405615	43 (0.910)					coding (601/672 nt)	PP_3887	hypothetical protein

TTTTTTCGATCTGTTCGCCAAAGGCGAAATTATCACGATGGCGAAATAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4405473‑4405582 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaagCTGGACAAGCAAGCGCTGCGGCCTGTTGCCCAACTTGTAGGCCGAATGAGAGAGCGTGAAAAAGCCGCTTGACGAATTGGCGAGTGTTTTGGCATTATTTCGCCATCGTGATAATTTCGCCTTTGGCGAACAGATCGAAAAAAGCCCG  <  NC_002947/4405615‑4405468                                                                                                                                                                                                                                                                    TTTTTTCGATCTGTTCGCCAAAGGCGAAATTATCACGATGGCGAAATAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGCTGGACAAGCAAGCGCTGCGGCCTGTTGCCCAACTTG                                                                                                                 >  6:203529/1‑147   TTTTCGATCTGTTCGCCAAAGGCGAAATTATCACGATGGCGAAATAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGCTGGACAAGCAAGCGCTGCGGCCTGTTGCCCAACTTGTAG                                                                                                              <  5:203529/148‑1                                                               GCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGCTGGACAAGCAAGCGCTGCGGCCTGTTGCCCAACTTGTAGG                                                                                                             >  1:47088/1‑89                                                               GCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGCTGGACAAGCAAGCGCTGCGGCCTGTTGCCCAACTTGTAGG                                                                                                             <  2:47088/89‑1                                                                                                          ACAAGCTGGACAAGCAAGCGCTGCTGCCTGTTGCCCAACTTGTAGGCCGAATGAGAGAGCGTGAAAAAGCCGCTTGACGAATTGGCGATTGTTTTGGCATTATTTCGCCATCGTGATAATTTCGCCTTTGGCGAACAGATCGAAAAAA       <  6:212052/148‑1                                                                                                          ACAAGCTGGACAAGCAAGCGCTGCGGCCTGTTGCCCAACTTGTAGGCCGAATGAGAGAGCGTGAAAAAGCCGCTTGACGAATTGGCGAGTGTTTTGGCATTATTTCGCCATCGTGATAATTTCGCCTTTGGCGAACAGATCGAAAAAAG      <  6:90315/149‑1                                                                                                          ACAAGCTGGACAAGCAAGCGCTGCGGCCTGTTGCCCAACTTGTAGGCCGAATGAGAGAGCGTGAAAAAGCCGCTTGACGAATTGGCGAGTGTTTTGGCATTATTTCGCCATCGTGATAATTTCGCCTTTGGCGAACAGATCGAAAAAA       <  5:268391/148‑1                                                                                                           CAAGCTGGACAAGCAAGCGCTGCGGCCTGTTGCCCAACTTGTAGGCCGAATGAGAGAGCGTGAAAAAGCCGCTTGACGAATTGGCGAGTGTTTTGGCATTATTTCGCCATCGTGATAATTTCGCCTTTGGCGAACAGATCGAAAAAAGC     >  5:310004/1‑149                                                                                                              GCTGGACAAGCAAGCGCTGCGGCCTGTTGCCCAACTTGTAGGCCGAATGAGAGAGCGTGAAAAAGCCGCTTGACGAATTGGCGAGTGTTTTGGCATTATTTCGCCATCGTGATAATTTCGCCTTTGGCGAACAGATCGAAAAAAGCCCG  <  2:106644/149‑1                                                                                                              GCTGGACAAGCAAGCGCTGCGGCCTGTTGCCCAACTTGTAGGCCGAATGAGAGAGCGTGAAAAAGCCGCTTGACGAATTGGCGAGTGTTTTGGCATTATTTCGCCATCGTGATAATTTCGCCTTTGGCGAACAGATCGAAAAAAGCCCG  >  4:84107/1‑149                                                                                                                                                                                                                                                                    TTTTTTCGATCTGTTCGCCAAAGGCGAAATTATCACGATGGCGAAATAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4405473‑4405582 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaagCTGGACAAGCAAGCGCTGCGGCCTGTTGCCCAACTTGTAGGCCGAATGAGAGAGCGTGAAAAAGCCGCTTGACGAATTGGCGAGTGTTTTGGCATTATTTCGCCATCGTGATAATTTCGCCTTTGGCGAACAGATCGAAAAAAGCCCG  <  NC_002947/4405615‑4405468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.