New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4405582	40 (0.810)	4 (0.080)	4/246	NT	8.9%	coding (634/672 nt)	PP_3887	hypothetical protein
	?	NC_002947	= 4405615	43 (0.910)					coding (601/672 nt)	PP_3887	hypothetical protein

CGGGCTTTTTTCGATCTGTTCGCCAAAGGCGAAATTATCACGATGGCGAAATAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCTTCCACGAAGACGCACACCGCTCCTGGCCCCCAACCCTCTCGATCATGAACC  >  NC_002947/4405468‑4405754                                                                                                                                                    |                                                                                                                                            cGGGCTTTTTTCGATCTGTTCGCCAAAGGCGAAATTATCACGATGGCGAAATAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGc                                                                                                                                            <  2:106644‑M2/149‑2 (MQ=255) cGGGCTTTTTTCGATCTGTTCGCCAAAGGCGAAATTATCACGATGGCGAAATAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGc                                                                                                                                            >  4:84107‑M2/1‑148 (MQ=255)    gCTTTTTTCGATCTGTTCGCCAAAGGCGAAATTATCACGATGGCGAAATAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGcttg                                                                                                                                         >  5:310004‑M2/1‑145 (MQ=255)     cTTTTTTCGATCTGTTCGCCAAAGGCGAAATTATCACGATGGCGAAATAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGcttgt                                                                                                                                        <  6:90315‑M2/149‑6 (MQ=255)      ttttttCGATCTGTTCGCCAAAGGCGAAATTATCACGATGGCGAAATAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGcttgt                                                                                                                                        <  5:268391‑M2/148‑6 (MQ=255)      ttttttCGATCTGTTCGCCAAAGGCGAAATTATCACGATGGCGAAATAATGCCAAAACAATCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCAGCAGCGCTTGCTTGTCCAGcttgt                                                                                                                                        <  6:212052‑M2/148‑6 (MQ=255)          ttCGATCTGTTCGCCAAAGGCGAAATTATCACGATGGCGAAATAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAat                                                                                                                                    <  6:123505/148‑1 (MQ=255)                            ggCGAAATTATCACGATGGCGAAATAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTcc                                                                                                                 >  6:219953/1‑149 (MQ=255)                                   ttATCACGATGGCGAAATAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGAtct                                                                                                          <  1:178862/149‑1 (MQ=255)                                     aTCACGATGGCGAAATAATGCAAAAACACTCGCCAATTCGACAAGCGGCTTTTTAACGCTCTCTAATTAGGCCTACAAGTTGGGCAACAGGCCGAAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGAtct                                                                                                          >  2:234461/1‑147 (MQ=255)                                              gCGAAATAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTc                                                                                                <  8:92683/148‑1 (MQ=255)                                              gCGAAATAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTc                                                                                                <  1:106644/148‑1 (MQ=255)                                               cGAAATAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCAc                                                                                              <  5:90315/149‑1 (MQ=255)                                                 aaaTAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGa                                                                                            <  6:268391/149‑1 (MQ=255)                                                      atGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTcc                                                                                                        >  8:250632/1‑132 (MQ=255)                                                      atGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGccc                                                                                        >  3:241594/1‑148 (MQ=255)                                                         ccAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAAt                                                                                     <  2:232865/148‑1 (MQ=255)                                                               cacTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCg                                                                               >  4:256898/1‑148 (MQ=255)                                                                acTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGa                                                                             <  5:219953/149‑1 (MQ=255)                                                                  tCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGa                                                                                            >  7:249125/1‑132 (MQ=255)                                                                  tCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGa                                                                                            <  8:249125/132‑1 (MQ=255)                                                                    gCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATcc                                                                          >  6:152324/1‑148 (MQ=255)                                                                        aTTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCg                                                                               >  2:37776/1‑139 (MQ=255)                                                                        aTTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCg                                                                               <  1:37776/139‑1 (MQ=255)                                                                            gTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTACTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCAc                                                                  <  4:242752/148‑1 (MQ=255)                                                                            ctctaGCGGCGTTTTCAGGCTCTCTCATTCGGCCTACCACGTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATGCATCTTCag                                                                  <  6:150384/144‑2 (MQ=255)                                                                             tCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGc                                                                <  2:118829/149‑1 (MQ=255)                                                                                    gCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTgcg                                                         <  4:241594/149‑1 (MQ=255)                                                                                         ttCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCtt                                                    >  3:38968/1‑149 (MQ=255)                                                                                            aCGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCTTCCa                                                 >  8:233892/1‑149 (MQ=255)                                                                                                  tctcATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCTTCCACGAAGa                                           >  7:73868/1‑149 (MQ=255)                                                                                                  tctcATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCTTCCACGAAGa                                           >  4:125839/1‑149 (MQ=255)                                                                                                    tcATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCCGATCTCCGCCCAGTCACGCGCCCAATGGCTCGGCTCCCTCTTCACGCCCGTGCGCTCTTCCACGCAGCCg                                         >  2:131462/1‑149 (MQ=255)                                                                                                    tcATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCTTCCACGAAGACg                                         >  7:34450/1‑149 (MQ=255)                                                                                                            ccTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGcttgtaggccgaatgagagagcgtgaaaaagccgcttgacgaattggc                                                                                             <  2:47088‑M2/89‑49 (MQ=255)                                                                                                            ccTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGcttgtaggccgaatgagagagcgtgaaaaagccgcttgacgaattggc                                                                                             >  1:47088‑M2/1‑41 (MQ=255)                                                                                                             cTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGcttgtaggccgaatgagagagcgtgaaaaagccgcttgacgaattggcgagtgttttggcattatttcgccatcgtgataatttcgcctttggcgaacagatcgaaaa                                 <  5:203529‑M2/148‑109 (MQ=255)                                                                                                             cTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCAc                                                                  <  7:223236/115‑1 (MQ=255)                                                                                                             cTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCAc                                                                  >  8:223236/1‑115 (MQ=255)                                                                                                             cTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCTTCCACGAAGACGCACACCGCt                                >  6:78800/1‑149 (MQ=255)                                                                                                                cAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGcttgtaggccgaatgagagagcgtgaaaaagccgcttgacgaattggcgagtgttttggcattatttcgccatcgtgataatttcgcctttggcgaacagatcgaaaaaa                               >  6:203529‑M2/1‑37 (MQ=255)                                                                                                                      gggCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCCCTCTTCCACGAAGACGCACACCGCTCCTGGcccc                       >  5:197168/1‑149 (MQ=255)                                                                                                                        gCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCTTCCACGAAGACGCACACCGCTCCTGGccccc                      >  3:248257/1‑148 (MQ=255)                                                                                                                        gCAACAGGCCGCAGCGCTTGCTTGGCCAGCTTGTCAATATGGGCGCCAAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCTTCCACGAAGACGCACACCGCTCCTGGCCCCCa                     <  8:147380/149‑1 (MQ=255)                                                                                                                         cAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCTTCCACGAAGACGCACACCGCTCCTGGCCCCCaa                    >  5:19903/1‑149 (MQ=255)                                                                                                                           aCAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATc                                                                       >  2:68932/1‑96 (MQ=255)                                                                                                                           aCAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCTTCCACGAAGACGCACACCGCTCCTGGCCCCCAAcc                  <  5:152324/149‑1 (MQ=255)                                                                                                                              ggCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCTTCCACGAAGACGCACACCGCTCCTGGCCCCCAACCctc               <  8:73868/149‑1 (MQ=255)                                                                                                                                    aGCGATTGCTTGTCCAGCTTGTCAATATGTGCGCCCAATCGCTCCCAGATCTACGCCCAGTCAAGATCCCAATGGCTCTGATCCATCTTCACGCCCGTTCGCTCTTCCACGAAGACGCACACCGCTCCTTGCCCCCAACCCTCTCGATc         <  1:234461/149‑1 (MQ=255)                                                                                                                                     gcgcTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCTTCCACGAAGACGCACACCGCTCCTGGCCCCCAACCCTCTCGATCa        <  6:197168/149‑1 (MQ=255)                                                                                                                                      cgcTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCTTCCACGAAGACGCACACCGCTCCTGGCCCCCAACCCTCTCGATCAt       <  3:125839/149‑1 (MQ=255)                                                                                                                                           gcttgTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCTTCCAc                                                <  4:269862/103‑1 (MQ=255)                                                                                                                                           gcttgTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCTTCCAc                                                >  3:269862/1‑103 (MQ=255)                                                                                                                                            cttgTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCTTCCACGAAGACGCACACCGCTCCTGGCCCCCAACCCTCTCGATCATGAAcc  <  3:256898/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                            CGGGCTTTTTTCGATCTGTTCGCCAAAGGCGAAATTATCACGATGGCGAAATAATGCCAAAACACTCGCCAATTCGTCAAGCGGCTTTTTCACGCTCTCTCATTCGGCCTACAAGTTGGGCAACAGGCCGCAGCGCTTGCTTGTCCAGCTTGTCAATATGGGCGCCCAATCGCTCCCAGATCTCCGCCCAGTCACGAGCCCAATGGCTCGGATCCATCTTCACGCCCGTGCGCTCTTCCACGAAGACGCACACCGCTCCTGGCCCCCAACCCTCTCGATCATGAACC  >  NC_002947/4405468‑4405754

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.