New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4956751 =	64 (1.300)	4 (0.080)	4/248	NT	6.0%	coding (4/1374 nt) coding (767/792 nt)	fliI fliH	flagellum‑specific ATP synthase flagellar assembly protein FliH
	?	NC_002947	4956805 =	63 (1.320)					coding (713/792 nt)	fliH	flagellar assembly protein FliH

GCATCGAGACGGCCCACAGCCGTATCGATGCCACCATGGAAACGCGTATCGAAAAAGCGGTGACGCAGCTGTTCGACCAGTTGCACGATCATTCCCTGCACCCGGCGGCGCCAGACATGTCGATAGACCTGGACGCGCCGGCCGAGCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4956901‑4956751 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTGCTGTCTTCCAGCAGCCGCCAGTTCTCCT  >  NC_002947/4956805‑4956952                                                                                                                                                                                                                                                                                                             GCATCGAGACGGCCCACAGCCGTATCGATGCCACCATGGAAACGCGTATCGAAAAAGCGGTGACGCAGCTGTTCGACCAGTTGCACGATCATTCCCTGCACCCGGCGGCGCCAGACATGTCGATAGACCTGGACGCGCCGGCCGAGCGT                                                                                                                                                        >  3:298932/1‑149  CATCGAGACGGCCCACAGCCGTATCGATGCCACCATGGAAACGCGTATCGAAAAAGCGGTGACGCAGCTGTTCGACCAGTTGCACGATCATTCCCTGCACCCGGCGGCGCCAGACATGTCGATAGACCTGGACGCGCCGGCCGAGCGTG                                                                                                                                                       >  7:36600/1‑149                                                                                            TTCCCTGCACCCGGCGGCGCCAGACATGTCGATAGACCTGGACGCGCCGGCCGAGCGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGT                                                             >  1:227334/1‑149                                                                                             TCCCTGCACCCGGCGGCGCCAGACATGTCGATAGACCTGGACGCGCCGGCCGAGCGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTC                                                            >  3:233605/1‑149                                                                                               CCTGCACCCGGCGGCGCCAGACATGTCGATAGACCTGGACGCGCCGGCCGAGCGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCT                                                           <  4:233605/148‑1                                                                                                                                CCTGGACGCGCCGGCCGAGCGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTGCTGTC                         <  2:227334/149‑1                                                                                                                                                     TGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTGCTGTCTTCCAGCAGCCGCCAGTTCTC    <  5:320439/149‑1                                                                                                                                                       CAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTGCTGTCTTCCAGCAGCCGCCAGTTCTCCT  <  7:60052/149‑1                                                                                                                                                                                                                                                                                                             GCATCGAGACGGCCCACAGCCGTATCGATGCCACCATGGAAACGCGTATCGAAAAAGCGGTGACGCAGCTGTTCGACCAGTTGCACGATCATTCCCTGCACCCGGCGGCGCCAGACATGTCGATAGACCTGGACGCGCCGGCCGAGCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4956901‑4956751 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTGCTGTCTTCCAGCAGCCGCCAGTTCTCCT  >  NC_002947/4956805‑4956952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.