New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4956751 =	64 (1.300)	4 (0.080)	4/248	NT	6.0%	coding (4/1374 nt) coding (767/792 nt)	fliI fliH	flagellum‑specific ATP synthase flagellar assembly protein FliH
	?	NC_002947	4956805 =	63 (1.320)					coding (713/792 nt)	fliH	flagellar assembly protein FliH

CGCAGGCCTTCGGCTTCCAGGGTGAGGCCGACCATACGCAGCAAGCGGCCTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCT  >  NC_002947/4956603‑4956895                                                                                                                                                     |                                                                                                                                                 aggagaactggcggctgctggaagacagcacgctgctaccgggtggttgccgcatcgagacggcccacagccgtatcgatgccaccatggaaacgcgtatcgaaaaagcggtgacgcagctgttcgaccagttgcacgatcattccctg                                                                                                                                                  <  7:60052‑M1/1‑1 (MQ=255)   gagaactggcggctgctggaagacagcacgctgctaccgggtggttgccgcatcgagacggcccacagccgtatcgatgccaccatggaaacgcgtatcgaaaaagcggtgacgcagctgttcgaccagttgcacgatcattccctGCa                                                                                                                                                <  5:320439‑M1/3‑1 (MQ=255)    aGGCCTTCGGCTTCCAGGGTGAGGCCGACCATACGCAGCAAGCGGCCTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACgg                                                                                                                                                  <  6:156255/146‑1 (MQ=255)    aGGCCTTCGGCTTCCAGGGTGAGGCCGACCATACGCAGCAAGCGGCCTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACgg                                                                                                                                                  >  5:156255/1‑146 (MQ=255)    aGGCCTTCGGCTTCCAGGGTGAGGCCGACCATACGCAGCAAGCGGCCTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCAc                                                                                                                                               >  1:109590/1‑149 (MQ=255)    aGGCCTTCGGCTTCCAGGGTGAGGCCGACCATACGCAGCAAGCGGCCTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCAc                                                                                                                                               >  6:137253/1‑149 (MQ=255)      gCCTTCGGCTTCCAGGGTGAGGCCGACCATACGCAGCAAGCGGCCTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGc                                                                                                                                             <  7:96797/149‑1 (MQ=255)        cTTCGGCTTCCAGGGTGAGGCCGACCATACGCAGCAAGCGGCCTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTc                                                                                                                                           >  8:168976/1‑149 (MQ=255)         ttCGGCTTCCAGGGTGAGGCCGACCATACGCAGCAAGCGGCCTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTcg                                                                                                                                          >  2:54753/1‑149 (MQ=255)                    gggTGAGGCCGACCATACGCAGCAAGCGGCCTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTc                                                                                                                               <  5:137253/149‑1 (MQ=255)                      gTGAGGCCGACCATACGCAGCAAGCGGCCTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTc                                                                                                                               >  2:171439/1‑147 (MQ=255)                       tGAGGCCGACCATACGCAGCAAGCGGCCTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAg                                                                                                                            <  1:318249/149‑1 (MQ=255)                        gacagcacgctgctaccgggtggttgccgcatcgagacggcccacagccgtatcgatgccaccatggaaacgcgtatcgaaaaagcggtgacgcagctgttcgaccagttgcacgatcattccctGCACGCTCGGCCGGCGCGTCCAgg                                                                                                                           <  2:227334‑M1/24‑1 (MQ=255)                                ccATACGCAGCAAGCGGCCTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGa                                                                                                                   <  7:2533/149‑1 (MQ=255)                                 cATACGCAGCAAGCGGCCTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGa                                                                                                                   >  8:36600/1‑148 (MQ=255)                                 cATACGCAGCAAGCGGCCTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGAc                                                                                                                  <  7:229188/149‑1 (MQ=255)                                     cGCAGCAAGCGGCCTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATg                                                                                                               <  8:255526/148‑1 (MQ=255)                                      gcagcaAGCGGCCTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTc                                                                                                             >  7:54875/1‑149 (MQ=255)                                      gcagcaAGCGGCATTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTCGGCTGTCAACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTc                                                                                                             >  3:134403/1‑149 (MQ=255)                                                 ccTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGccgccg                                                                                                  >  4:202239/1‑149 (MQ=255)                                                  cTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCgg                                                                                                 <  2:230940/149‑1 (MQ=255)                                                  cTTCGAAGATGGGGTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCTTCCAGGTCTATCGACATGTCTGGCGCCGCCgg                                                                                                 <  4:134403/149‑1 (MQ=255)                                                         gaTGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAgg                                                                                          >  4:252288/1‑149 (MQ=255)                                                          agacggcccacagccgtatcgatgccaccatggaaacgcgtatcgaaaaagcggtgacgcagctgttcgaccagttgcacgatcattccctGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAgg                                                                                          <  4:233605‑M1/57‑1 (MQ=255)                                                           gacggcccacagccgtatcgatgccaccatggaaacgcgtatcgaaaaagcggtgacgcagctgttcgaccagttgcacgatcattccctGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGa                                                                                        >  3:233605‑M1/91‑149 (MQ=255)                                                            acggcccacagccgtatcgatgccaccatggaaacgcgtatcgaaaaagcggtgacgcagctgttcgaccagttgcacgatcattccctGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGaa                                                                                       >  1:227334‑M1/90‑149 (MQ=255)                                                             ggctgggcCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGaa                                                                                       <  1:54753/148‑1 (MQ=255)                                                             ggctgggcCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGaa                                                                                       <  2:109590/148‑1 (MQ=255)                                                              gctgggcCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAAt                                                                                      >  7:271832/1‑148 (MQ=255)                                                              gctgggcCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATg                                                                                     <  3:53698/149‑1 (MQ=255)                                                                  ggcCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCg                                                                                 <  7:168976/149‑1 (MQ=255)                                                                   gcCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGt                                                                                <  3:202239/149‑1 (MQ=255)                                                                   gcCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGt                                                                                <  1:171439/149‑1 (MQ=255)                                                                    ccGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTg                                                                               >  4:298932/1‑149 (MQ=255)                                                                       gCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAAGGATCGTGc                                                                              >  2:153819/1‑147 (MQ=255)                                                                        cAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAAc                                                                           <  8:54875/149‑1 (MQ=255)                                                                        cAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAAc                                                                           <  3:252288/149‑1 (MQ=255)                                                                           cTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTgg                                                                        >  2:181478/1‑149 (MQ=255)                                                                                    cTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGaa                                                                   >  7:167771/1‑145 (MQ=255)                                                                                    cTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGaa                                                                   <  8:167771/145‑1 (MQ=255)                                                                                    cTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGc                                                               >  3:302292/1‑149 (MQ=255)                                                                                    cTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGc                                                               >  4:178072/1‑149 (MQ=255)                                                                                     tCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCt                                                              >  5:31524/1‑149 (MQ=255)                                                                                       aGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGc                                                            >  4:278423/1‑149 (MQ=255)                                                                                         cGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGt                                                          >  5:226629/1‑149 (MQ=255)                                                                                              gTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCg                                                     >  8:284627/1‑149 (MQ=255)                                                                                                 cccAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTgg                                                                                                          <  7:58928/93‑1 (MQ=255)                                                                                                 cccAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTgg                                                                                                          >  8:58928/1‑93 (MQ=255)                                                                                                  ccAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCttt                                                 >  7:189664/1‑149 (MQ=255)                                                                                                  ccAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCttt                                                 >  5:138764/1‑149 (MQ=255)                                                                                                  ccAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCttt                                                 >  4:293693/1‑149 (MQ=255)                                                                                                  ccAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCttt                                                 >  2:257352/1‑149 (MQ=255)                                                                                                   cAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCGAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGCATGATCGTGCAACTGGTCGAACAGCTGCGTCACGGCtgtt                                                >  8:126627/1‑149 (MQ=255)                                                                                                        gCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGa                                            >  4:36172/1‑148 (MQ=255)                                                                                                        gCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGAt                                           <  4:302292/149‑1 (MQ=255)                                                                                                        gCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGAt                                           <  8:189664/149‑1 (MQ=255)                                                                                                          ttGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATAc                                         >  5:79567/1‑149 (MQ=255)                                                                                                            gCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATAc                                         <  8:271832/147‑1 (MQ=255)                                                                                                             ccGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGa                                                                                        <  1:141279/99‑1 (MQ=255)                                                                                                             ccGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGa                                                                                        >  2:141279/1‑99 (MQ=255)                                                                                                              cGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGt                                     >  8:94176/1‑149 (MQ=255)                                                                                                              cGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGt                                     >  7:102430/1‑149 (MQ=255)                                                                                                               gAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGtt                                    <  6:226629/149‑1 (MQ=255)                                                                                                                    tGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAAc                                                                  >  4:153328/1‑114 (MQ=255)                                                                                                                    tGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAAc                                                                  <  3:153328/114‑1 (MQ=255)                                                                                                                      gTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCAtg                              <  6:31524/148‑1 (MQ=255)                                                                                                                         cGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCAtggtg                           <  7:94176/148‑1 (MQ=255)                                                                                                                             cAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCAt                       <  3:278423/148‑1 (MQ=255)                                                                                                                             cAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCAt                       <  1:257352/148‑1 (MQ=255)                                                                                                                                 gcgcATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATa                  >  2:49673/1‑149 (MQ=255)                                                                                                                                   gcATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAATTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACg                >  6:110273/1‑149 (MQ=255)                                                                                                                                    cATGTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGTCATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACgg               <  5:326071/149‑1 (MQ=255)                                                                                                                                     aTCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGc              >  4:34832/1‑149 (MQ=255)                                                                                                                                             tGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGcc      >  5:142886/1‑149 (MQ=255)                                                                                                                                                ccACGGCACGCTCGGCCGGCGCGACCAGGTCTAAAGACATGTCTGGCGCCGCCGGGGGCAGGGAATGATCGTGCAACTGGTCGAACACCTGCGTCACCGCTGTTTCGATACACGATTCCATGGTGGCATCGATACGGCGGTGGGCCGtc   >  1:278265/1‑149 (MQ=255)                                                                                                                                                 cACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGtct  >  1:152417/1‑149 (MQ=255)                                                                                                                                                 cACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGAAACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGtct  >  6:320439/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                 CGCAGGCCTTCGGCTTCCAGGGTGAGGCCGACCATACGCAGCAAGCGGCCTTCGACGATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCT  >  NC_002947/4956603‑4956895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.