New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4956751 =	64 (1.300)	4 (0.080)	4/248	NT	6.0%	coding (4/1374 nt) coding (767/792 nt)	fliI fliH	flagellum‑specific ATP synthase flagellar assembly protein FliH
	?	NC_002947	4956805 =	63 (1.320)					coding (713/792 nt)	fliH	flagellar assembly protein FliH

GATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTGCTGTCTTCCAGCAGCCGCCAGTTCTCCT  >  NC_002947/4956659‑4956952                                                                                                                                                   |                                                                                                                                                    gaTGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAgg                                                                                                                                                   >  4:252288/1‑149 (MQ=255)  agacggcccacagccgtatcgatgccaccatggaaacgcgtatcgaaaaagcggtgacgcagctgttcgaccagttgcacgatcattccctGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAgg                                                                                                                                                   <  4:233605‑M1/57‑1 (MQ=255)   gacggcccacagccgtatcgatgccaccatggaaacgcgtatcgaaaaagcggtgacgcagctgttcgaccagttgcacgatcattccctGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGa                                                                                                                                                 >  3:233605‑M1/91‑149 (MQ=255)    acggcccacagccgtatcgatgccaccatggaaacgcgtatcgaaaaagcggtgacgcagctgttcgaccagttgcacgatcattccctGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGaa                                                                                                                                                >  1:227334‑M1/90‑149 (MQ=255)     ggctgggcCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGaa                                                                                                                                                <  2:109590/148‑1 (MQ=255)     ggctgggcCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGaa                                                                                                                                                <  1:54753/148‑1 (MQ=255)      gctgggcCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAAt                                                                                                                                               >  7:271832/1‑148 (MQ=255)      gctgggcCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATg                                                                                                                                              <  3:53698/149‑1 (MQ=255)          ggcCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCg                                                                                                                                          <  7:168976/149‑1 (MQ=255)           gcCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGt                                                                                                                                         <  3:202239/149‑1 (MQ=255)           gcCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGt                                                                                                                                         <  1:171439/149‑1 (MQ=255)            ccGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTg                                                                                                                                        >  4:298932/1‑149 (MQ=255)               gCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAAGGATCGTGc                                                                                                                                       >  2:153819/1‑147 (MQ=255)                cAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAAc                                                                                                                                    <  3:252288/149‑1 (MQ=255)                cAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAAc                                                                                                                                    <  8:54875/149‑1 (MQ=255)                   cTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTgg                                                                                                                                 >  2:181478/1‑149 (MQ=255)                            cTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGaa                                                                                                                            <  8:167771/145‑1 (MQ=255)                            cTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGaa                                                                                                                            >  7:167771/1‑145 (MQ=255)                            cTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGc                                                                                                                        >  3:302292/1‑149 (MQ=255)                            cTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGc                                                                                                                        >  4:178072/1‑149 (MQ=255)                             tCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCt                                                                                                                       >  5:31524/1‑149 (MQ=255)                               aGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGc                                                                                                                     >  4:278423/1‑149 (MQ=255)                                 cGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGt                                                                                                                   >  5:226629/1‑149 (MQ=255)                                      gTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCg                                                                                                              >  8:284627/1‑149 (MQ=255)                                          ccAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCttt                                                                                                          >  5:138764/1‑149 (MQ=255)                                          ccAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCttt                                                                                                          >  2:257352/1‑149 (MQ=255)                                          ccAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCttt                                                                                                          >  7:189664/1‑149 (MQ=255)                                          ccAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCttt                                                                                                          >  4:293693/1‑149 (MQ=255)                                           cAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCGAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGCATGATCGTGCAACTGGTCGAACAGCTGCGTCACGGCtgtt                                                                                                         >  8:126627/1‑149 (MQ=255)                                                gCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGa                                                                                                     >  4:36172/1‑148 (MQ=255)                                                gCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGAt                                                                                                    <  4:302292/149‑1 (MQ=255)                                                gCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGAt                                                                                                    <  8:189664/149‑1 (MQ=255)                                                  ttGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATAc                                                                                                  >  5:79567/1‑149 (MQ=255)                                                    gCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATAc                                                                                                  <  8:271832/147‑1 (MQ=255)                                                     ccGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGa                                                                                                                                                 <  1:141279/99‑1 (MQ=255)                                                     ccGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGa                                                                                                                                                 >  2:141279/1‑99 (MQ=255)                                                      cGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGt                                                                                              >  8:94176/1‑149 (MQ=255)                                                      cGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGt                                                                                              >  7:102430/1‑149 (MQ=255)                                                       gAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGtt                                                                                             <  6:226629/149‑1 (MQ=255)                                                            tGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAAc                                                                                                                           >  4:153328/1‑114 (MQ=255)                                                            tGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAAc                                                                                                                           <  3:153328/114‑1 (MQ=255)                                                              gTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCAtg                                                                                       <  6:31524/148‑1 (MQ=255)                                                                 cGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCAtggtg                                                                                    <  7:94176/148‑1 (MQ=255)                                                                     cAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCAt                                                                                <  3:278423/148‑1 (MQ=255)                                                                     cAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCAt                                                                                <  1:257352/148‑1 (MQ=255)                                                                         gcgcATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATa                                                                           >  2:49673/1‑149 (MQ=255)                                                                           gcATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAATTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACg                                                                         >  6:110273/1‑149 (MQ=255)                                                                            cATGTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGTCATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACgg                                                                        <  5:326071/149‑1 (MQ=255)                                                                             aTCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGc                                                                       >  4:34832/1‑149 (MQ=255)                                                                                     tGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGcc                                                               >  5:142886/1‑149 (MQ=255)                                                                                       ttccctgcacccggcggcgccagacatgtcgatagacctggacgcgccggccgagcgtgcAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGt                                                             >  1:227334‑M2/61‑149 (MQ=255)                                                                                        tccctgcacccggcggcgccagacatgtcgatagacctggacgcgccggccgagcgtgcAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGtc                                                            >  3:233605‑M2/60‑149 (MQ=255)                                                                                        ccACGGCACGCTCGGCCGGCGCGACCAGGTCTAAAGACATGTCTGGCGCCGCCGGGGGCAGGGAATGATCGTGCAACTGGTCGAACACCTGCGTCACCGCTGTTTCGATACACGATTCCATGGTGGCATCGATACGGCGGTGGGCCGtc                                                            >  1:278265/1‑149 (MQ=255)                                                                                         cACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGtct                                                           >  1:152417/1‑149 (MQ=255)                                                                                         cACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGAAACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGtct                                                           >  6:320439/1‑149 (MQ=255)                                                                                          cctgcacccggcggcgccagacatgtcgatagacctggacgcgccggccgagcgtgcAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGtct                                                           <  4:233605‑M2/91‑1 (MQ=255)                                                                                              CACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATg                                                      >  7:36600‑M1/1‑149 (MQ=255)                                                                                               ACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGc                                                     >  3:298932‑M1/1‑149 (MQ=255)                                                                                                         ggcGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGGGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAaccacc                                           <  7:126627/149‑1 (MQ=255)                                                                                                          gcgcGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCAccc                                          <  5:156673/149‑1 (MQ=255)                                                                                                           cgcgTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCg                                         >  3:140575/1‑149 (MQ=255)                                                                                                           cgcgTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCg                                         <  1:181478/149‑1 (MQ=255)                                                                                                            gcgTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCgg                                        <  6:138764/149‑1 (MQ=255)                                                                                                              gTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTa                                      <  6:142886/149‑1 (MQ=255)                                                                                                               tCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTag                                     >  4:144459/1‑149 (MQ=255)                                                                                                                ccAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTTGGCCGTCTCGCTGCGGCAACCACCCGGGagc                                    >  2:15483/1‑149 (MQ=255)                                                                                                                 cAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTagca                                   <  3:36172/149‑1 (MQ=255)                                                                                                                   ggTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTagcagc                                 >  1:124894/1‑149 (MQ=255)                                                                                                                         tCGACATGTCTGGCGCCGCCGTGTGCAGGGAATGATCGAGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTGCTg                           <  6:267099/149‑1 (MQ=255)                                                                                                                         tCGACATGTCTGGCGCCGCCGGGTGCAGGGACTGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTg                              <  1:15483/146‑1 (MQ=255)                                                                                                                           cctggacgcgccggccgagcgtgcAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTGCTGTc                         <  2:227334‑M2/125‑1 (MQ=255)                                                                                                                            aCATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTGCTGTcg                        >  3:41800/1‑148 (MQ=255)                                                                                                                            aCATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTGCTGTCt                        >  8:60052/1‑149 (MQ=255)                                                                                                                              aTGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTGCTGTCTTc                      <  3:34832/149‑1 (MQ=255)                                                                                                                                 tCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAATTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTGCTGTCTTCca                    <  5:110273/148‑1 (MQ=255)                                                                                                                                          gccgGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTGCTGTCTTCCAGCAGCCGCCa          <  7:284627/149‑1 (MQ=255)                                                                                                                                          gccgGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTGCTGTCTTCCAGCAGCCGCCa          <  6:79567/149‑1 (MQ=255)                                                                                                                                                tgcAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTGCTGTCTTCCAGCAGCCGCCAGTtctc    <  5:320439‑M2/146‑1 (MQ=255)                                                                                                                                                  cAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTGCTGTCTTCCAGCAGCCGCCAGTTctcct  <  7:60052‑M2/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GATGGGCTGGGCCGGCAGCTCGATGGCCTCAGCGTAAGTGCCCAGACGCTTGCCGAAGCTGGTGCGTTCAAGGCGCATCTGGGCTGTCCACGGCACGCTCGGCCGGCGCGTCCAGGTCTATCGACATGTCTGGCGCCGCCGGGTGCAGGGAATGATCGTGCAACTGGTCGAACAGCTGCGTCACCGCTTTTTCGATACGCGTTTCCATGGTGGCATCGATACGGCTGTGGGCCGTCTCGATGCGGCAACCACCCGGTAGCAGCGTGCTGTCTTCCAGCAGCCGCCAGTTCTCCT  >  NC_002947/4956659‑4956952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.