New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5244969	31 (0.630)	4 (0.080)	4/248	NT	12.5%	coding (376/834 nt)	hmgR	Hmg transcriptional repressor
	?	NC_002947	= 5245017	26 (0.540)					coding (424/834 nt)	hmgR	Hmg transcriptional repressor

GGGCGCGAGGCATTGCGGGTGGGGCTGGCGGCGCTGGGCAGCATCGATGTGCTGAAGGTGGCGGCGATGCCGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5244819‑5244969 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaCCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGCTTACCACCGTGGCCCCCTGGTTGCCCCACACGGCGATGAAGCAGCTTTCGTTGAGCTCATCTCGCAACTGCGACAACGGCATCGCCGCCACCTTCA  <  NC_002947/5245017‑5244871                                                                                                                                                                                                                                                                                                            GGGCGCGAGGCATTGCGGGTGGGGCTGGCGGCGCTGGGCAGCATCGATGTGCTGAAGGTGGCGGCGATGCCGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAA                                                                                                                                                        <  2:5663/148‑1                                           ATCGATGTGCTGAAGGTGGCGGCGATGCCGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGG                                                                                                              >  1:170461/1‑148                                                        AGGTGGCGGCGATGCCGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGCTT                                                                                                <  2:170461/149‑1                                                                                                                ATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTT                                                                                                        <  5:55097/85‑1                                                                                                                ATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTT                                                                                                        >  6:55097/1‑85                                                                                                                                                      CACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGCTTACCACCGTGGCCCCCTGGTTGCCCCACACGGCGATGAAGCAGCTTTCGTTGAGCTCATCTCGCAACTGCGACAACGGCATCGCCGCCACCTTCA  <  2:300557/149‑1                                                                                                                                                                                                                                                                                                            GGGCGCGAGGCATTGCGGGTGGGGCTGGCGGCGCTGGGCAGCATCGATGTGCTGAAGGTGGCGGCGATGCCGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5244819‑5244969 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaCCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGCTTACCACCGTGGCCCCCTGGTTGCCCCACACGGCGATGAAGCAGCTTTCGTTGAGCTCATCTCGCAACTGCGACAACGGCATCGCCGCCACCTTCA  <  NC_002947/5245017‑5244871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.