New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5244969	31 (0.630)	4 (0.080)	4/248	NT	12.5%	coding (376/834 nt)	hmgR	Hmg transcriptional repressor
	?	NC_002947	= 5245017	26 (0.540)					coding (424/834 nt)	hmgR	Hmg transcriptional repressor

TGAAGGTGGCGGCGATGCCGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGC  >  NC_002947/5244871‑5245160                                                                                                                                                   |                                                                                                                                                tGAAGGTGGCGGCGATGCCGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGtg                                                                                                                                               <  2:300557‑M2/149‑3 (MQ=255)      gTGGCGGCGATGCCGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGcc                                                                                                                                          <  4:11830/149‑1 (MQ=255)              gATGCCGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCa                                                                                                                                  <  1:300557/149‑1 (MQ=255)                          gCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCAcc                                                                                                                       <  1:149013/148‑1 (MQ=255)                             gTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGTGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGc                                                                                                                   <  2:211023/149‑1 (MQ=255)                                gCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTg                                                                                                                 <  4:44928/148‑1 (MQ=255)                                      tGAGCTCAACGAATGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTcg                                                                                                          <  3:207063/149‑1 (MQ=255)                                         gCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTcgccg                                                                                                       >  1:281885/1‑149 (MQ=255)                                             aaCGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTa                                                                                                   >  7:24877/1‑149 (MQ=255)                                                gAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCt                                                                                                <  2:24101/149‑1 (MQ=255)                                                        ctTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCcgag                                                                                         <  2:281885/148‑1 (MQ=255)                                                            aTCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCcgagcgag                                                                                     >  4:240975/1‑148 (MQ=255)                                                               gCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAAc                                                                                 >  3:257939/1‑149 (MQ=255)                                                                 cGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAAcc                                                                                >  5:95871/1‑148 (MQ=255)                                                                                 ggggCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAg                                                               <  8:24877/149‑1 (MQ=255)                                                                                      cACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAAc                                                          <  6:95871/149‑1 (MQ=255)                                                                                              tAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCt                                                  >  4:42590/1‑149 (MQ=255)                                                                                               aaGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGtgcttaccaccgtggccccctggttgccccacacggcgatgaagcagctttcgttgagctcatctcgcaactgcgacaacggcatcgccgccacct                                                 <  2:170461‑M2/149‑97 (MQ=255)                                                                                                    tCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGc                                                      <  8:237385/139‑1 (MQ=255)                                                                                                    tCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGc                                                      >  7:237385/1‑139 (MQ=255)                                                                                                     cGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGcaa                                            >  5:121865/1‑148 (MQ=255)                                                                                                       aaCCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGtgcttaccaccgtggccccctggttgccccacacggcgat                                                                                                         <  5:55097‑M2/85‑41 (MQ=255)                                                                                                       aaCCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGtgcttaccaccgtggccccctggttgccccacacggcgat                                                                                                         >  6:55097‑M2/1‑45 (MQ=255)                                                                                                            gCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGc                                    >  4:41977/1‑149 (MQ=255)                                                                                                             ccGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGtgcttaccaccgtggccccctggttgccccacacggcgatgaagcagctttcgttgagctcatctcgcaactgcgacaacggcatcgccgccaccttcagcacatcgat                                    >  1:170461‑M2/1‑39 (MQ=255)                                                                                                                           aCCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGCCTATcccc                      >  8:172698/1‑145 (MQ=255)                                                                                                                             cGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGaa                                                           >  4:138491/1‑109 (MQ=255)                                                                                                                                ggtgACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACActgc                >  8:64301/1‑149 (MQ=255)                                                                                                                                  tgACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACActgctg              <  6:121865/149‑1 (MQ=255)                                                                                                                                      ccAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCCCCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCg          <  7:172698/149‑1 (MQ=255)                                                                                                                                      ccAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTAGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCAGACACTGCTGGCCg          >  8:216654/1‑149 (MQ=255)                                                                                                                                              gttcggtGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCcgc  >  4:174186/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                TGAAGGTGGCGGCGATGCCGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCATCGAACCTGCCGTGCGCGCGGTCACCGTGGTGACCCAGATCGGTTCGGTGCTGCCGTTGCTCAGTTCGTCCACCGGGCTGGTATTCGCCGCCTACCTGCCCGAGCGAGAAACCCAGGAGCTGCGCGACAGGGAACTGGCCGCTTTGCAACAAACCGCCAGTGACTATCACACACTGCTGGCCGGCATCCGC  >  NC_002947/5244871‑5245160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.