New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5252364 =	54 (1.090)	6 (0.130)	6/242	NT	9.4%	coding (153/456 nt)	PP_4628	hypothetical protein
	?	NC_002947	5252443 =	65 (1.390)					coding (74/456 nt)	PP_4628	hypothetical protein

GATGAAAGTCGCCATTATTTCCGGCTCGGTCTATGGCACCGCCGAAGAAGTCGCCCGTCATGCTGAATCGCTGCTCAAGGCGGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACGCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5252517‑5252364 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccttgAGCAGCGATTCAGCATGACGGGCGACTTCTTCGGCGGTGCCATAGACCGAGCCGGAAATAATGGCGACTTTCATCGGGTAGAGGATTCCGAAACTGAGTGAAAACGTAGGATACTAGCATTCAACGCTGGCAAAAGGCCGCC  >  NC_002947/5252443‑5252584                                                                                                                                                                                                                                                                                                          GATGAAAGTCGCCATTATTTCCGGCTCGGTCTATGGCACCGCCGAAGAAGTCGCCCGTCATGCTGAATCGCTGCTCAAGGCGGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACG                                                                                                                                                     >  1:104018/1‑149                                                                        TGCTCAAGGCGGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACGCCTTGAGCAGCGATTCAGCATGACGGGCGACTTCTTCGGCGGTGCCATAGACCGAGCCGGAAATAATGGC                                                                               >  2:51694/1‑148                                                                              AGGCGGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACGCCTTGAGCAGCGATTCAGCATGACGGGCGACTTCTTCGGCGGTGCCATAGACCGAGCCGGAAATAATG                                                                                 <  5:299365/140‑1                                                                              AGGCGGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACGCCTTGAGCAGCGATTCAGCATGACGGGCGACTTCTTCGGCGGTGCCATAGACCGAGCCGGAAATAATG                                                                                 >  6:299365/1‑140                                                                               GGCGGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACGCCTTGAGCAGCGATTCAGCATGACGGGCGACTTCTTCGGCGGTGCCATAGACCGAGCCGGAAATAATGGCGACTTTCA                                                                       >  6:267379/1‑149                                                                                                         CTGCGCGTGCCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACGCCTTGAGCAGCGATTCAGCATGACGGGCGACTTCTTCGGCGGTGCCATAGACCGAGCCGGAAATAATGGCGACTTTCATCGGGTAGAGGATTCCGAAACTGAG                                              <  5:267379/148‑1                                                                                                                  CCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACGCCTTGAGCAGCGATTCAGCATGACGGGCGACTTCTTCGGCGGTGCCATAGACCGAGCCGGAAATAATGGCGACTTTCATCGGGTAGAGGATTCCGAAACTGAGTGAAAACGTA                                    <  1:51694/149‑1                                                                                                                                                    CGCCTTGAGCAGCGATTCAGCATGACGGGCGACTTCTTCGGCGGTGCCATAGACCGAGCCGGAAATAATGGCGACTTTCATCGGGTAGAGGATTCCGAAACTGAGTGAAAACGTAGGATACTAGCATTCAACGCTGGCAAAAGGCCGCC  <  4:80181/149‑1                                                                                                                                                                                                                                                                                                          GATGAAAGTCGCCATTATTTCCGGCTCGGTCTATGGCACCGCCGAAGAAGTCGCCCGTCATGCTGAATCGCTGCTCAAGGCGGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACGCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5252517‑5252364 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccttgAGCAGCGATTCAGCATGACGGGCGACTTCTTCGGCGGTGCCATAGACCGAGCCGGAAATAATGGCGACTTTCATCGGGTAGAGGATTCCGAAACTGAGTGAAAACGTAGGATACTAGCATTCAACGCTGGCAAAAGGCCGCC  >  NC_002947/5252443‑5252584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.