New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5380827	58 (1.170)	3 (0.060)	3/242	NT	5.5%	coding (129/537 nt)	bamE	outer membrane protein assembly factor BamE
	?	NC_002947	= 5380868	49 (1.050)					coding (170/537 nt)	bamE	outer membrane protein assembly factor BamE

CAAGATAGTGGAAGTCGCCCACCGATGCAAAACACCAAGCTCTTGCTAACCAGCCTCACCCTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5380675‑5380827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgataAACCTTACTTGCCGGCGGGTCATTCCCGGGCGTAATTGGTCTATCATGTCTTGCGTGACGACATTGCCCTGCTGGATGTCGATTTTGTAAACCCCGGGAAACGAGCAACCGGCGAGTGCGAGCAGTCCCACTAGGGTGAGGCT  <  NC_002947/5380868‑5380726                                                                                                                                                                                                                                                                                                          CAAGATAGTGGAAGTCGCCCACCGATGCAAAACACCAAGCTCTTGCTAACCAGCCTCACCCTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACA                                                                                                                                                      <  3:37852/148‑1   AGATAGTGGAAGTCGCCCACCGATGCAAAACACCAAGCTCTTGCTAACCAGCCTCACCCTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATta                                                                                                                                                   >  3:20815/1‑147   AGATAGTGGAAGTCGCCCACCGATGCAAAACACCAAGCTCTTGCTAACCAGCCTCACCCTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGA                                                                                                                                                   <  6:304808/149‑1                                             GCTAACCAGCCTCACCCTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAAACCTTACTTGCCGGCGGGTCATTCCCGGGCGTAATTGGT                                                                                                         >  8:121626/1‑149                                                         CACCCTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAAACCTTACTTGCCGGCGGGTCATTCCCGGGCGTAATTGGTCTATCATGTCTT                                                                                             <  7:135944/149‑1                                                           CCCTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAAACCTTACTTGCCGGCGGGTCATTCCCGGGCGTAATTGGTCTATCATGTCTTGC                                                                                           <  7:121626/149‑1                                                                                                                                                   CATGATAAACCTTACTTGCCGGCGGGTCATTCCCGGGCGTAATTGGTCTATCATGTCTTGCGTGACGACATTGCCCTGCTGGATGTCGATTTTGTAAACCCCGGGAAACGAGCAACCGGGGAGTGCGAGCAGTCCCACTAGGGTGAGGC   >  2:121216/1‑149                                                                                                                                                   CATGATAAACCTTACTTGCCGGCGGGTCATTCCCGGGCGTAATTGGTCTATCATGTCTTGCGTGACGACATTGCCCTGCTGGATGTCGATTTTGTAAACCCCGGGAAACGAGCAACCGGCGAGTGCGAGCAGTCCCACTAGGGTGAGGC   >  4:41447/1‑149                                                                                                                                                   CATGATAAACCTTACTTGCCGGCGGGTCATTCCCGGGCGTAATTGGTCTATCATGTCTTGCGTGACGACATTGCCCTGCTGGATGTCGATTTTGTAAACCCCGGGAAACGAGCAACCGGCGAGTGCGAGCAGTCCCACTAGGGTGAGGC   >  8:82498/1‑149                                                                                                                                                    ATGATAAACCTTACTTGCCGGCGGGTCATTCCCGGGCGTAATTGGTCTATCATGTCTTGCGTGACGACATTGCCCTGCTGGATGTCGATTTTGTAAACCCCGGGAAACGAGCAACCGGCGAGTGCGAGCAGTCCCACTAGGGTGAGGCT  <  1:170443/149‑1                                                                                                                                                                                                                                                                                                          CAAGATAGTGGAAGTCGCCCACCGATGCAAAACACCAAGCTCTTGCTAACCAGCCTCACCCTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5380675‑5380827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgataAACCTTACTTGCCGGCGGGTCATTCCCGGGCGTAATTGGTCTATCATGTCTTGCGTGACGACATTGCCCTGCTGGATGTCGATTTTGTAAACCCCGGGAAACGAGCAACCGGCGAGTGCGAGCAGTCCCACTAGGGTGAGGCT  <  NC_002947/5380868‑5380726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.