| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5380827 | 58 (1.170) | 3 (0.060) | 3/242 | NT | 5.5% | coding (129/537 nt) | bamE | outer membrane protein assembly factor BamE |
| ? | NC_002947 | = 5380868 | 49 (1.050) | coding (170/537 nt) | bamE | outer membrane protein assembly factor BamE | |||||
TAACCAGCCTCACCCTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTACAGCCTGCAGCCTGGTGGCGGTAAACGTCAGCAAGAACGCATGAGTGTATTTTTCAACGAAAGCGATCAACTGGTCAGCCTG > NC_002947/5380721‑5381010 | tAACCAGCCTCACCCTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGtt > 1:259508/1‑148 (MQ=255) aGCCTCACCCTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTtatcat < 1:170443‑M2/149‑7 (MQ=255) gCCTCACCCTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTtatcatg > 8:82498‑M2/1‑142 (MQ=255) gCCTCACCCTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTtatcatg > 4:41447‑M2/1‑142 (MQ=255) gCCTCACCCTAGTGGGACTGCTCGCACTCCCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTtatcatg > 2:121216‑M2/1‑142 (MQ=255) ccTCACCCTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATgg < 5:192056/149‑1 (MQ=255) ccTCACCCTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATgg < 5:196566/149‑1 (MQ=255) cTCACCCTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATggg > 3:74235/1‑149 (MQ=255) ccTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAAcc > 3:288389/1‑149 (MQ=255) ccTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATAATGGGCAAcc > 5:25209/1‑149 (MQ=255) gTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATTATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCt < 4:20815/149‑1 (MQ=255) tCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCAGCTGATTCAGGa > 7:65372/1‑148 (MQ=255) aCTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACtt < 2:132260/149‑1 (MQ=255) tCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAGCCCGCTGATTCAGGACACtgt > 8:109241/1‑146 (MQ=255) gCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTc < 2:158058/147‑1 (MQ=255) cTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAg > 4:227962/1‑130 (MQ=255) cTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAg < 3:227962/130‑1 (MQ=255) tCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCg > 8:139729/1‑149 (MQ=255) tCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGCACACATTCAACACCAATCg > 1:306312/1‑149 (MQ=255) gTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGtt < 2:259508/149‑1 (MQ=255) gTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGtt < 8:65372/149‑1 (MQ=255) tttCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTg < 8:261382/149‑1 (MQ=255) ccGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGtt > 2:272356/1‑144 (MQ=255) ccGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGtt < 1:272356/144‑1 (MQ=255) ccGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGa < 6:25209/148‑1 (MQ=255) cGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGAt > 2:46080/1‑148 (MQ=255) ggTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTAcc < 6:195111/149‑1 (MQ=255) ttACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTg > 2:203974/1‑148 (MQ=255) tACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGa < 2:69966/140‑1 (MQ=255) tACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGa > 1:69966/1‑140 (MQ=255) aaaTCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTAcagc < 1:46080/149‑1 (MQ=255) aCATCCAGCAGGGCAAAGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATGATGGGCAACCCGCTGATTCAGGACACTTTCAACACAAATCGTTGGGATTACCTGTAcagcctgcag > 2:82749/1‑149 (MQ=255) cATGCAGCAGGGCTATGTCGTGACGCAAGACATGATAGACGTATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTTTCATGGGCAACGCGCTGATTCAGGACACTTTCAACAGCAATCGTTGGGATTAc < 5:61696/133‑1 (MQ=255) cATCCAGCAGGGCAATGTCCTCACGCAAGACATGATAGACCAAATACGCACGGGAATGACACGCCTGCAAGAAAGCTTTATCATGGGCAACCCGCTGATTCACGACACTTACAACACCAAACGTTGGGAATAc > 6:61696/1‑133 (MQ=255) aTCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTAcagcctgcagcc > 1:133975/1‑149 (MQ=255) ccAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTAcagcctgcagcctg > 8:130279/1‑149 (MQ=255) agcagGGGAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTggg < 8:277280/123‑1 (MQ=255) agcagGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTggg > 7:277280/1‑123 (MQ=255) gggCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTACAGCCTGCAGCCTGGTGGCg < 2:170443/149‑1 (MQ=255) gggCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTACAGCCTGCAGCCTGGTGGCg < 4:288389/149‑1 (MQ=255) tGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTACAGCCTGCAGCCTGGTGGCGGTAAAc < 4:74235/149‑1 (MQ=255) tGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTACAGCCTGCAGCCTGGTGGCGGTAAAc < 7:139729/149‑1 (MQ=255) gtcACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTACAGCCTGCAGCCTGGTGGCGGTAAACGTc < 2:306312/148‑1 (MQ=255) gtcACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTACAGCCTGCAGCCTGGTGGCGGTAAACGTCa < 1:203974/149‑1 (MQ=255) gCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTtatcatgtcttgcgtgacgacattgccctgctggatgtcgattttgtaaaccccgggaaacgagcaaccggcgagtgcgagcagtcccactaggg < 7:121626‑M2/149‑96 (MQ=255) gCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTACAGCCTGCAGCCTGGTGGCGGTAAACGTCAGc > 5:71686/1‑146 (MQ=255) aaGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTtatcatgtcttgcgtgacgacattgccctgctggatgtcgattttgtaaaccccgggaaacgagcaaccggcgagtgcgagcagtcccactagggtg < 7:135944‑M2/149‑98 (MQ=255) aaGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTACAGCCTGCAGCCTGGTGGCGGTAAACGTCAGCAAGaa > 3:4885/1‑149 (MQ=255) aaGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATGACCTGTACCGCCTGCCGCCTGGTGGCGGTAAACGTCAGCAAGac > 4:114772/1‑148 (MQ=255) gATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTACAGCCTGCAGCCTGGTGGCGGTAAACGTCAGCAAGAACGCAt > 3:7726/1‑147 (MQ=255) aTAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGATTATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTACAGCCTGCAGCCTGGTGGCGGTAAACGTCAGCAAGAACGCATGa < 7:130279/148‑1 (MQ=255) tAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTACAGCCTGCAGCCTGGTGGCGGTAAACGTCAGCAAGAACGCATGAgt > 2:25239/1‑149 (MQ=255) aCCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTtatcatgtcttgcgtgacgacattgccctgctggatgtcgattttgtaaaccccgggaaacgagcaaccggcgagtgcgagcagtcccactagggtgaggctggttagc > 8:121626‑M2/1‑40 (MQ=255) ccGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTACAGCCTGCAGCCTGGTGGCGGTAAACGTCAGCAAGAACGCATGAGTGTATTTTTCAACg > 5:167682/1‑148 (MQ=255) cGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACGAATCGTTGGGATTAGCTGTAGAGCCTGCAGCCTGGTGGCGGTTAGCGTCAGCAAGAACgga > 4:260383/1‑127 (MQ=255) gggAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTc < 3:195741/61‑1 (MQ=255) gggAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTACAGCCTGCAGCCTGGTGGCGGTAAACGTCAGCAAGAACGCATGAGTGTATTTTTCAACGaaa < 6:71686/149‑1 (MQ=255) gggAATGACCCGCCGGCAAGTAAGGTTTATAATGGGCAACCCGCTGATTCAGGACACTTTc > 4:195741/1‑61 (MQ=255) ccgGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTACAGCCTGCAGCCTGGTGGCGGTAAACGTCAGCAAGAACGCATGAGTGTATTTTTCAACGAAAGCGATCAACTgg < 3:114772/149‑1 (MQ=255) tAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTACAGCCTGCAGCCTGGTGGCGGTAAACGTCAGCAAGAACGCATGAGTGTATTTTTCAACGAAAGCGATCAACTGGTCAGCCTg > 3:22832/1‑149 (MQ=255) | TAACCAGCCTCACCCTAGTGGGACTGCTCGCACTCGCCGGTTGCTCGTTTCCCGGGGTTTACAAAATCGACATCCAGCAGGGCAATGTCGTCACGCAAGACATGATAGACCAATTACGCCCGGGAATGACCCGCCGGCAAGTAAGGTTTATCATGGGCAACCCGCTGATTCAGGACACTTTCAACACCAATCGTTGGGATTACCTGTACAGCCTGCAGCCTGGTGGCGGTAAACGTCAGCAAGAACGCATGAGTGTATTTTTCAACGAAAGCGATCAACTGGTCAGCCTG > NC_002947/5380721‑5381010 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |