| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5459626 = | 40 (0.810) | 4 (0.090) | 4/240 | NT | 9.4% | coding (45/1038 nt) | holA | DNA polymerase III subunit delta |
| ? | NC_002947 | 5459676 = | 40 (0.860) | coding (95/1038 nt) | holA | DNA polymerase III subunit delta | |||||
CCTGGAGCAGGGTGCCCCAGTCGAAGTTGGCGTCGGCACTGAATACCTGGCGTTCATCGAAACCTTGCTGACGCGCGGCATTGCGGATGGCGTCGGCGGCTTCCTGGCACAGCAGCGGGTCGTCGCCACTGACCACGTAGACCGGTGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5459777‑5459626‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccaggAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTGTTCGCCCAGCGCCGCCTGCTGGA > NC_002947/5459676‑5459820 CCTGGAGCAGGGTGCCCCAGTCGAAGTTGGCGTCGGCACTGAATACCTGGCGTTCATCGAAACCTTGCTGACGCGCGGCATTGCGGATGGCGTCGGCGGCTTCCTGGCACAGCAGCGGGTCGTCGCCACTGACCACGTAGACCGGTGC > 2:86552/1‑148 CTGGAGCAGGGTGCCCCAGTCGAAGTTGGCGTCGGCACTGAATACCTGGCGTTCATCGAAACCTTGCTGACGCGCGGCATTGCGGATGGCGTCGGCGGCTTCCTGGCACAGCAGCGGGTCGTCGCCACTGACCACGTAGACCGGTGC > 7:178654/1‑147 GAGCAGGGTGCCCCAGTCGAAGTTGGCGTCGGCACTGAATACCTGGCGTTCATCGAAACCTTGCTGACGCGCGGCATTGCGGATGGCGTCGGCGGCTTCCTGGCACAGCAGCGGGTCGTCGCCACTGACCACGTAGACCGGTGCCAGG < 1:132889/148‑1 TGGCGTCGGCACTGAATACCTGGCGTTCATCGAAACCTTGCTGACGCGCGGCATTGCGGATGGCGTCGGCGGCTTCCTGGCACAGCAGCGGGTCGTCGCCACTGACCACGTAGACCGGT < 1:304169/119‑1 TGGCGTCGGCACTGAATACCTGGCGTTCATCGAAACCTTGCTGACGCGCGGCATTGCGGATGGCGTCGGCGGCTTCCTGGCACAGCAGCGGGTCGTCGCCACTGACCACGTAGACCGGT > 2:304169/1‑119 CGGCTTCCTGGCACAGCAGCGGGTCGTCGCCACTGACCACGTAGACCGGTGCCAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGC < 7:243116/123‑1 CGGCTTCCTGGCACAGCAGCGGGTCGTCGCCACTGACCACGTAGACCGGTGCCAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGC > 8:243116/1‑123 CTGGCACAGCAGCGGGTCGTCGCCACTGACCACGTAGACCGGTGCCAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCA > 7:152201/1‑112 CTGGCACAGCAGCGGGTCGTCGCCACTGACCACGTAGACCGGTGCCAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCA < 8:152201/112‑1 GCCAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAATGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTGTTCGCCCAGCGCCGCCTGCTG < 6:206541/149‑1 CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTGTTCGCCCAGCGCCGCCTGCTGG > 7:24408/1‑148 AGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTGTTCGCCCAGCGCCGCCTGCTGGA > 4:39605/1‑148 CCTGGAGCAGGGTGCCCCAGTCGAAGTTGGCGTCGGCACTGAATACCTGGCGTTCATCGAAACCTTGCTGACGCGCGGCATTGCGGATGGCGTCGGCGGCTTCCTGGCACAGCAGCGGGTCGTCGCCACTGACCACGTAGACCGGTGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5459777‑5459626‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgccaggAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTGTTCGCCCAGCGCCGCCTGCTGGA > NC_002947/5459676‑5459820 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |