New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5459626 =	40 (0.810)	4 (0.090)	4/240	NT	9.4%	coding (45/1038 nt)	holA	DNA polymerase III subunit delta
	?	NC_002947	5459676 =	40 (0.860)					coding (95/1038 nt)	holA	DNA polymerase III subunit delta

CTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTC  >  NC_002947/5459481‑5459773                                                                                                                                                  |                                                                                                                                                     tccagcaggcggcgctgggcgaacagcgacaggcttgcaccggcctggagcagggtgccccagtcgaagttggcgtcggcactgaatacctggcgttcatcgaaaccttgctgacgcgcggcattgcggatggcgtcggcggcttCCt                                                                                                                                                    >  4:39605‑M1/146‑148 (MQ=255)  ccagcaggcggcgctgggcgaacagcgacaggcttgcaccggcctggagcagggtgccccagtcgaagttggcgtcggcactgaatacctggcgttcatcgaaaccttgctgacgcgcggcattgcggatggcgtcggcggcttCCTg                                                                                                                                                   >  7:24408‑M1/145‑148 (MQ=255)   cagcaggcggcgctgggcgaacagcgacaggcttgcaccggcctggagcagggtgccccagtcgaagttggcgtcggcactgaatacctggcattcatcgaaaccttgctgacgcgcggcattgcggatggcgtcggcggcttCCTGGc                                                                                                                                                 <  6:206541‑M1/6‑1 (MQ=255)     ccgccgCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACGCCACAACCCCCGGCAAGGCGCCCTGGCAc                                                                                                                                               >  7:83258/1‑149 (MQ=255)                 aGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTgg                                                                                                                                   <  7:123295/149‑1 (MQ=255)                        aCGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTgg                                                                                                                            <  7:277323/149‑1 (MQ=255)                          gCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATTAAACTCGCCCCCCCCCAACTCAACAAGCACCAGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGcg                                                                                                                          >  2:50783/1‑149 (MQ=255)                             tCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTACCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCAGGCACCGGTCTAAGTGGTCAGTGGcgacc                                                                                                                       >  6:114296/1‑148 (MQ=255)                                             taaGTACCGGGCAACTATCCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCAATTAAACTCGCCTCCGCCCAACTCAACTAGCACCTGCAAGGGGCCCTGGCACAGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGc‑c                                                                                                       <  8:257750/147‑1 (MQ=255)                                             gAAGTACCGCGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGGTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑Ca                                                                                                      <  1:272836/149‑1 (MQ=255)                                                          aCTAAGCCCGCGAGGGGCGCCCGCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGAc                                                                                         <  5:55903/149‑1 (MQ=255)                                                           cTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCgacgac                                                                                                                     <  2:223629/121‑1 (MQ=255)                                                           cTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACACGCCCCCGCCCAACTCAACAAGCACCAGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGCCCCGCGGCGGTGC‑CAGGAAGCAGCCGACg                                                                                        >  2:253635/1‑149 (MQ=255)                                                           cTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATAAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCgacgac                                                                                                                     >  1:223629/1‑121 (MQ=255)                                                            tAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTGCCCCTGAAACTCGCCCCCGCCCCACTCCACCAGCCCCGGCCAGGCGCCCTGGGCCCGGTCGACGGGGGCAGTGGCGCCGACCCCCGGCGGTGC‑CAGGGAGCcgccgccgc                                                                                       >  7:75980/1‑149 (MQ=255)                                                                 ccGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTACCCAAGAAAAAAGCCCCCCCCCAAAACAACAACCACCAGCAAAGCCCCCAGGCACCCGTCGAACTGGTCAGTGGCGAACACCCCCAGCGGTGG‑CACGAAACCCCCGCCGCCaaac                                                                                  >  4:156267/1‑146 (MQ=255)                                                                           cgcCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCcgc                                                                        <  3:156267/149‑1 (MQ=255)                                                                               gcactgaatacctggcgttcatcgaaaccttgctgacgcgcggcattgcggatggcgtcggcggcttCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAgccg                                                                                              >  8:243116‑M1/68‑123 (MQ=255)                                                                               gcactgaatacctggcgttcatcgaaaccttgctgacgcgcggcattgcggatggcgtcggcggcttCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAgccg                                                                                              <  7:243116‑M1/56‑1 (MQ=255)                                                                                   tgaatacctggcgttcatcgaaaccttgctgacgcgcggcattgcggatggcgtcggcggcttCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAg                                                                                                     <  8:152201‑M1/49‑1 (MQ=255)                                                                                   tgaatacctggcgttcatcgaaaccttgctgacgcgcggcattgcggatggcgtcggcggcttCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAg                                                                                                     >  7:152201‑M1/64‑112 (MQ=255)                                                                                      gcCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCTGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCGGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAg                                                             <  1:253635/149‑1 (MQ=255)                                                                                         ccGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGtt                                                          >  7:126083/1‑149 (MQ=255)                                                                                            ccTGTTCCCCATGAACCTCGCCCCCGCCCAACTCAACACGCACCTCCAAGGCGCCCTGGCACCGTTCAACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCg                                                       <  6:193215/149‑1 (MQ=255)                                                                                                     cATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGc                                               >  8:178654/1‑148 (MQ=255)                                                                                                        gAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAgg                                           >  7:287933/1‑149 (MQ=255)                                                                                                             tCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTCCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTAtt                                       >  7:282468/1‑148 (MQ=255)                                                                                                                cccccGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGt                                   <  1:50783/149‑1 (MQ=255)                                                                                                                 ccccGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTg                                  >  8:170395/1‑149 (MQ=255)                                                                                                                 ccccGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATCAACGCCAGGTATTCAGTg                                  >  4:137926/1‑149 (MQ=255)                                                                                                                   ccGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGcc                                              >  1:291071/1‑135 (MQ=255)                                                                                                                   ccGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGcc                                              <  2:291071/135‑1 (MQ=255)                                                                                                                       ccAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACg                            <  7:170395/149‑1 (MQ=255)                                                                                                                          aCTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGcc                          >  2:293059/1‑148 (MQ=255)                                                                                                                           cTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGGTGCTGTGC‑CAGTAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCaa                        <  8:83258/149‑1 (MQ=255)                                                                                                                              aacaaGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCcgcgc                                                                      <  8:91581/100‑1 (MQ=255)                                                                                                                              aacaaGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCcgcgc                                                                      >  7:91581/1‑100 (MQ=255)                                                                                                                              aacaaGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACtt                     >  7:20174/1‑149 (MQ=255)                                                                                                                                caaGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAg                                                             >  4:251971/1‑107 (MQ=255)                                                                                                                                caaGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAg                                                             <  3:251971/107‑1 (MQ=255)                                                                                                                                    cACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTg               >  8:236698/1‑149 (MQ=255)                                                                                                                                    cACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTg               <  8:75980/149‑1 (MQ=255)                                                                                                                                     aCCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTgg              <  1:293059/149‑1 (MQ=255)                                                                                                                                      ccTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTggg             <  8:287933/149‑1 (MQ=255)                                                                                                                                       cTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGCGGAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTggg             >  1:86552/1‑149 (MQ=255)                                                                                                                                       cTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAg                                            <  4:202827/117‑1 (MQ=255)                                                                                                                                          cAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAATGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCAc         >  5:206541/1‑149 (MQ=255)                                                                                                                                                  CCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTc  <  1:132889‑M1/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CTGCCCGCCGCCAGCAAGCCGAGACGCCTCAGCAATCGCCACTGGAAGTACCGGGCAACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTC  >  NC_002947/5459481‑5459773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.