New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5459626 =	40 (0.810)	4 (0.090)	4/240	NT	9.4%	coding (45/1038 nt)	holA	DNA polymerase III subunit delta
	?	NC_002947	5459676 =	40 (0.860)					coding (95/1038 nt)	holA	DNA polymerase III subunit delta

ACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTGTTCGCCCAGCGCCGCCTGCTGGA  >  NC_002947/5459538‑5459820                                                                                                                                            |                                                                                                                                                 aCTAAGCCCGCGAGGGGCGCCCGCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGAc                                                                                                                                        <  5:55903/149‑1 (MQ=255)  cTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACACGCCCCCGCCCAACTCAACAAGCACCAGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGCCCCGCGGCGGTGC‑CAGGAAGCAGCCGACg                                                                                                                                       >  2:253635/1‑149 (MQ=255)   tAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTGCCCCTGAAACTCGCCCCCGCCCCACTCCACCAGCCCCGGCCAGGCGCCCTGGGCCCGGTCGACGGGGGCAGTGGCGCCGACCCCCGGCGGTGC‑CAGGGAGCcgccgccgc                                                                                                                                      >  7:75980/1‑149 (MQ=255)        ccGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTACCCAAGAAAAAAGCCCCCCCCCAAAACAACAACCACCAGCAAAGCCCCCAGGCACCCGTCGAACTGGTCAGTGGCGAACACCCCCAGCGGTGG‑CACGAAACCCCCGCCGCCaaac                                                                                                                                 >  4:156267/1‑146 (MQ=255)                  cgcCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCcgc                                                                                                                       <  3:156267/149‑1 (MQ=255)                      gcactgaatacctggcgttcatcgaaaccttgctgacgcgcggcattgcggatggcgtcggcggcttCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAgccg                                                                                                                                             <  7:243116‑M1/56‑1 (MQ=255)                      gcactgaatacctggcgttcatcgaaaccttgctgacgcgcggcattgcggatggcgtcggcggcttCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAgccg                                                                                                                                             >  8:243116‑M1/68‑123 (MQ=255)                             gcCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCTGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCGGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAg                                                                                                            <  1:253635/149‑1 (MQ=255)                                ccGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGtt                                                                                                         >  7:126083/1‑149 (MQ=255)                                   ccTGTTCCCCATGAACCTCGCCCCCGCCCAACTCAACACGCACCTCCAAGGCGCCCTGGCACCGTTCAACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCg                                                                                                      <  6:193215/149‑1 (MQ=255)                                            cATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGc                                                                                              >  8:178654/1‑148 (MQ=255)                                               gAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAgg                                                                                          >  7:287933/1‑149 (MQ=255)                                                    tCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTCCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTAtt                                                                                      >  7:282468/1‑148 (MQ=255)                                                       cccccGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGt                                                                                  <  1:50783/149‑1 (MQ=255)                                                        ccccGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTg                                                                                 >  8:170395/1‑149 (MQ=255)                                                        ccccGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATCAACGCCAGGTATTCAGTg                                                                                 >  4:137926/1‑149 (MQ=255)                                                          ccGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGcc                                                                                             <  2:291071/135‑1 (MQ=255)                                                          ccGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGcc                                                                                             >  1:291071/1‑135 (MQ=255)                                                              ccAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACg                                                                           <  7:170395/149‑1 (MQ=255)                                                                 aCTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGcc                                                                         >  2:293059/1‑148 (MQ=255)                                                                  cTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGGTGCTGTGC‑CAGTAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCaa                                                                       <  8:83258/149‑1 (MQ=255)                                                                     aacaaGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCcgcgc                                                                                                                     >  7:91581/1‑100 (MQ=255)                                                                     aacaaGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCcgcgc                                                                                                                     <  8:91581/100‑1 (MQ=255)                                                                     aacaaGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACtt                                                                    >  7:20174/1‑149 (MQ=255)                                                                       caaGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAg                                                                                                            <  3:251971/107‑1 (MQ=255)                                                                       caaGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAg                                                                                                            >  4:251971/1‑107 (MQ=255)                                                                           cACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTg                                                              >  8:236698/1‑149 (MQ=255)                                                                           cACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTg                                                              <  8:75980/149‑1 (MQ=255)                                                                            aCCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTgg                                                             <  1:293059/149‑1 (MQ=255)                                                                             ccTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTggg                                                            <  8:287933/149‑1 (MQ=255)                                                                              cTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGCGGAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTggg                                                            >  1:86552/1‑149 (MQ=255)                                                                              cTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAg                                                                                           <  4:202827/117‑1 (MQ=255)                                                                                 cAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAATGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCAc                                                        >  5:206541/1‑149 (MQ=255)                                                                                    cggcttcctggcacagcagcgggtcgtcgccactgaccacgtagaccggtgccaggAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGc                                                                                <  7:243116‑M2/67‑1 (MQ=255)                                                                                    cggcttcctggcacagcagcgggtcgtcgccactgaccacgtagaccggtgccaggAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGc                                                                                >  8:243116‑M2/57‑123 (MQ=255)                                                                                         CCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTc                                                 <  1:132889‑M1/148‑1 (MQ=255)                                                                                           ctggcacagcagcgggtcgtcgccactgaccacgtagaccggtgccaggAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCa                                                                                    <  8:152201‑M2/63‑1 (MQ=255)                                                                                           ctggcacagcagcgggtcgtcgccactgaccacgtagaccggtgccaggAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCa                                                                                    >  7:152201‑M2/50‑112 (MQ=255)                                                                                             GCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAgg                                             >  2:86552‑M1/1‑148 (MQ=255)                                                                                             GCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAg                                              >  7:178654‑M1/1‑147 (MQ=255)                                                                                               ACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCa                                                                        >  2:304169‑M1/1‑119 (MQ=255)                                                                                               ACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCa                                                                        <  1:304169‑M1/119‑1 (MQ=255)                                                                                                   gTCTACGTTGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGc                                      <  8:282468/149‑1 (MQ=255)                                                                                                     cTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCaa                                    >  6:127328/1‑149 (MQ=255)                                                                                                       aCGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCg                                          >  7:239659/1‑141 (MQ=255)                                                                                                       aCGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCg                                          <  8:239659/141‑1 (MQ=255)                                                                                                                   gCGACGACCCGCTGCTGTGC‑CAGGAAGCGGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTGTTc                      <  3:137926/149‑1 (MQ=255)                                                                                                                        gacCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTGTTCGcc                   >  3:288053/1‑147 (MQ=255)                                                                                                                          cccGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTg                         <  3:57643/139‑1 (MQ=255)                                                                                                                          cccGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTGTTCGCCCAgc               >  3:635/1‑149 (MQ=255)                                                                                                                          cccGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGAGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTg                         >  4:57643/1‑139 (MQ=255)                                                                                                                               tgctgTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTGTTCGCCCAGcgccgc          <  4:635/149‑1 (MQ=255)                                                                                                                                 ctgTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTGTTCGCCCAGcgccgc          <  2:132889/147‑1 (MQ=255)                                                                                                                                 ctgTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTGTTCGCCCAGcgccgc          <  7:236698/147‑1 (MQ=255)                                                                                                                                      gccaggAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAATGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTGTTCGCCCAGCGCCGCctgctg    <  6:206541‑M2/143‑1 (MQ=255)                                                                                                                                        caggAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTGTTCGCCCAGCGCCGCCTGCTgg   >  7:24408‑M2/5‑148 (MQ=255)                                                                                                                                         aggAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTGTTCGCCCAGCGCCGCCTGCTGGa  >  4:39605‑M2/4‑148 (MQ=255)                                                                                                                                            |                                                                                                                                                 ACTAAGCCCGCGAGGGGCGCCCTCGGGCGCCCCGCCTGTTCCCCATGAAACTCGCCCCCGCCCAACTCAACAAGCACCTGCAAGGCGCCCTGGCACCGGTCTACGTGGTCAGTGGCGACGACCCGCTGCTGTGC‑CAGGAAGCCGCCGACGCCATCCGCAATGCCGCGCGTCAGCAAGGTTTCGATGAACGCCAGGTATTCAGTGCCGACGCCAACTTCGACTGGGGCACCCTGCTCCAGGCCGGTGCAAGCCTGTCGCTGTTCGCCCAGCGCCGCCTGCTGGA  >  NC_002947/5459538‑5459820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.