New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5811876	35 (0.710)	3 (0.060)	3/242	NT	7.5%	coding (1204/2220 nt)	priA	primosome assembly protein
	?	NC_002947	= 5811907	41 (0.880)					coding (1235/2220 nt)	priA	primosome assembly protein

AGGAGAACATCCCGATCCTGCTCGGTTCCGCCACACCGTCGCTGGAAACCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5811724‑5811876 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctgcTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTTCACATCAAGGCGCAGCATGCGCGGCGGGCGTGCCCCTCCGGCGCGTTGGTTCATACGCAGCAGGCGGTAGCGGCCGGTCAGGGCGTTATGCAGGGTTTCCAGC  <  NC_002947/5811907‑5811764                                                                                                                                                                                                                                                                                                           AGGAGAACATCCCGATCCTGCTCGGTTCCGCCACACCGTCGCTGGAAACCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGC                                                                                                                                                      <  1:99078/149‑1   GAGAACATCCCGATCCTGCTCGGTTCCGCCACACCGTCGCTGGAAACCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCT                                                                                                                                                    >  5:232523/1‑149      AACATCCCGATCCTGCTCGGTTCCGCCACACCGTCGCTGGAAACCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGC                                                                                                                                                  >  6:209365/1‑148                                               AACCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTTC                                                                                                        <  5:135518/149‑1                                                                                                                 ACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGG                                                                                                              <  2:14890/77‑1                                                                                                                 ACGCCCGCCGCGCATGCTGCGCCTTGAAGTGAAGAGCCTGCTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGG                                                                                                              >  1:14890/1‑77                                                                                                                                                    GCCTGCTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTTCACATCAAGGCGCAGCATGCGCGGCGGGCGTGCCCCTCCGGCGCGTTGGTTCATACGCAGCAGGCGGTAGCGGCCGGTCAGGGCGTTATGCAGGGTTTCCAG   >  5:209365/1‑149                                                                                                                                                     CCTGCTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTTCACATCAAGGCGCAGCATGCGCGGCGGGCGTGCCCCTCCGGCGCGTTGGTTCATACGCAGCAGGCGGTAGCGGCCGGTCAGGGCGTTATGCAGGGTTTCCAGC  >  2:281836/1‑149                                                                                                                                                     CCTGCTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTTCACATCAAGGCGCAGCATGCGCGGCGGGCGTGCCCCTCCGGCGCGTTGGTTCATACGCAGCAGGCGGTAGCGGCCGGTCAGGGCGTTATGCAGGGTTTCCAGC  >  6:232523/1‑149                                                                                                                                                     CCTGCTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTTCACATCAAGGCGCAGCATGCGCGGCGGGCGTGCCCCTCCGGCGCGTTGGTTCATACGCAGCAGGCGGTAGCGGCCGGTCAGGGCGTTATGCAGGGTTTCCAGC  >  6:50427/1‑149                                                                                                                                                                                                                                                                                                           AGGAGAACATCCCGATCCTGCTCGGTTCCGCCACACCGTCGCTGGAAACCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5811724‑5811876 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcctgcTGCAGCGGGCCACTGATGCCGCTGTCCAGTGGCAGGCTCTTCACATCAAGGCGCAGCATGCGCGGCGGGCGTGCCCCTCCGGCGCGTTGGTTCATACGCAGCAGGCGGTAGCGGCCGGTCAGGGCGTTATGCAGGGTTTCCAGC  <  NC_002947/5811907‑5811764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.