New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5811876	35 (0.710)	3 (0.060)	3/242	NT	7.5%	coding (1204/2220 nt)	priA	primosome assembly protein
	?	NC_002947	= 5811907	41 (0.880)					coding (1235/2220 nt)	priA	primosome assembly protein

GCTGGAAACCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGCCCACGCTGCGATGCGCGCATGACCGTGCACCAGCG  >  NC_002947/5811764‑5812054                                                                                                                                                |                                                                                                                                                    gCTGGAAACCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAgcagg                                                                                                                                                >  6:232523‑M2/1‑144 (MQ=255) gCTGGAAACCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAgcagg                                                                                                                                                >  6:50427‑M2/1‑144 (MQ=255) gCTGGAAACCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAgcagg                                                                                                                                                >  2:281836‑M2/1‑144 (MQ=255)  cTGGAAACCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAgcaggc                                                                                                                                               >  5:209365‑M2/1‑143 (MQ=255)      aaaCCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCCCTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATc                                                                                                                                           >  6:207062/1‑149 (MQ=255)               aTAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCACGCTGCAGCAGGCTATCCCACAGAcc                                                                                                                                  >  3:70925/1‑149 (MQ=255)                  aCGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTg                                                                                                                               >  6:255467/1‑149 (MQ=255)                    gCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTg                                                                                                                               >  7:299685/1‑147 (MQ=255)                    gCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGa                                                                                                                             <  5:207062/149‑1 (MQ=255)                      ccTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAgg                                                                                                                           <  8:299685/149‑1 (MQ=255)                       cTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGc                                                                                                                          <  6:40536/149‑1 (MQ=255)                       cTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGc                                                                                                                          >  4:215050/1‑149 (MQ=255)                           ccGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGc                                                                                                                      <  3:215050/149‑1 (MQ=255)                            cGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGcc                                                                                                                     <  5:255467/149‑1 (MQ=255)                            cGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGc                                                                                                                      >  2:199355/1‑148 (MQ=255)                            cGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGc                                                                                                                      >  6:64932/1‑148 (MQ=255)                                       gCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTg                                                                                                          <  2:44162/149‑1 (MQ=255)                                       gCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTg                                                                                                          <  2:156024/149‑1 (MQ=255)                                                 tATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGc                                                                                                                      <  2:247546/127‑1 (MQ=255)                                                 tATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGc                                                                                                                      >  1:247546/1‑127 (MQ=255)                                                         aacggtccGGAGGGGCACGCCCGCCGCGTATGCTGCTCCTTGATGTGAAGTGCCTGCCAGTGTACAGCGGGATCTGTGGCGCGCTGCATCAGGCTATCCGAGAGACCCTGGAGGCTGTCCAACATGTGCTGGTGTTCCTCAACcgccgc                                                                                        <  4:70925/143‑1 (MQ=255)                                                         aaCGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCTTCAACcgccgc                                                                                        >  3:135034/1‑149 (MQ=255)                                                                 ggAGGGGCACGCCCGCCGCGCATGCTGCGCCTAGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGc                                                                                >  1:33396/1‑149 (MQ=255)                                                                  gAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGcc                                                                               <  1:199355/149‑1 (MQ=255)                                                                     gggCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCACCCGACGCGGCTTTGcccc                                                                             >  8:72987/1‑148 (MQ=255)                                                                      ggCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCaa                                                                           <  5:64932/149‑1 (MQ=255)                                                                       gCACGCCCGCCGCGCAGGCTGCGCCTTGCTGGGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTACCCGACAGACCCTGGAGGCTg                                                                                                                        <  7:296819/103‑1 (MQ=255)                                                                            cccgccGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGc                                                                     <  2:33396/149‑1 (MQ=255)                                                                                   cgcATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCa                                                              >  6:150738/1‑149 (MQ=255)                                                                                      aTGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATACGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACAGCCGCGGCGTTGCCCCAGCCTTGCTGTGCCACGa                                                           >  7:232652/1‑149 (MQ=255)                                                                                         ctgcGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTg                                                        >  2:245156/1‑149 (MQ=255)                                                                                            cgcCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCgg                                                     >  1:57279/1‑149 (MQ=255)                                                                                               cTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCggctg                                                  >  6:171019/1‑149 (MQ=255)                                                                                               cTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCggc                                                    <  1:70425/147‑1 (MQ=255)                                                                                               cTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCggc                                                    >  2:70425/1‑147 (MQ=255)                                                                                               cTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTCCTGTGCCACGATTGCggctg                                                  >  3:9362/1‑149 (MQ=255)                                                                                                       gAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAgcaggctcttcacatcaaggcgcagcatgcgcggcgggcgtgcccctccggcgcgttggttcatacgcagcaggcggtagcggccggtcagggcgttatgcagggtt                                          <  5:135518‑M2/149‑108 (MQ=255)                                                                                                           ctgatGCCGCTGTCCAGTGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATg                                      >  4:288601/5‑149 (MQ=255)                                                                                                            gCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGc                                     <  3:130575/149‑1 (MQ=255)                                                                                                             ccTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAgcaggctcttcacttcaaggcgcagcatgcgcggcgggcgt                                                                                                            >  1:14890‑M2/1‑36 (MQ=255)                                                                                                             ccTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAgcaggctcttcacatcaaggcgcagcatgcgcggcgggcgt                                                                                                            <  2:14890‑M2/77‑42 (MQ=255)                                                                                                                   aCTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCAAATGCCCACGCt                              >  5:7721/1‑149 (MQ=255)                                                                                                                        aCAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGCCCACGCTGCGAt                         <  5:150738/149‑1 (MQ=255)                                                                                                                         cAGTGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGCCCACGCTGCGAt                         <  3:288601/148‑1 (MQ=255)                                                                                                                             ggCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGCCCACGCTGCGATgcgcg                    >  8:252873/1‑149 (MQ=255)                                                                                                                               cATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGCCCACGCt                              <  3:279068/137‑1 (MQ=255)                                                                                                                               cATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGCCCACGCt                              >  4:279068/1‑137 (MQ=255)                                                                                                                                aTCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGCCCACGCTGCGATGCGCGCAt                 <  7:252873/149‑1 (MQ=255)                                                                                                                                   gatagCCTGCTGCAGCGGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGCCCACGCTGCGATGCGCGCATGAc              >  5:154016/5‑149 (MQ=255)                                                                                                                                            cTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGCCCACGCTGCGATGCGCGCATGACCGTGCAc       >  3:6415/1‑147 (MQ=255)                                                                                                                                               cagcagGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGCCCACGCTGCGATGCGCGCATGACCGTGCACCAgcg  >  3:66064/1‑149 (MQ=255)                                                                                                                                               cagcagGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGCCCACGCTGCGATGCGCGCATGACCGTGCACCAgc   <  2:57279/148‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    GCTGGAAACCCTGCATAACGCCCTGACCGGCCGCTACCGCCTGCTGCGTATGAACCAACGCGCCGGAGGGGCACGCCCGCCGCGCATGCTGCGCCTTGATGTGAAGAGCCTGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGCCCACGCTGCGATGCGCGCATGACCGTGCACCAGCG  >  NC_002947/5811764‑5812054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.