New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6117218 =	46 (0.930)	4 (0.090)	4/244	NT	8.7%	intergenic (+26/+86)	lpd/PP_5367	dihydrolipoyl dehydrogenase/transketolase domain‑containing protein
	?	NC_002947	6117252 =	40 (0.850)					intergenic (+60/+52)	lpd/PP_5367	dihydrolipoyl dehydrogenase/transketolase domain‑containing protein

ACGCTGCATGACCGCTACGGTATCTCCACCGATGCAGTGAGCGCGCAGATCAAGGCTTGGCTGTGACGTGATGCCTGAAGATAGAGCCGGCCGGAATTAAAGGCGGCTCTATCCCTGTATGCCCGCAAAGCAAATGCCGAAGGCAAGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6117369‑6117218 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcatACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGGAGATACCGTAGCGGTCATGCAGCGTCGGCAGAGCGCCAGCATCGAGGAAGGCAT  >  NC_002947/6117252‑6117398                                                                                                                                                                                                                                                                                                             ACGCTGCATGACCGCTACGGTATCTCCACCGATGCAGTGAGCGCGCAGATGAAGGCTTGGCTGTGACGTGATGCCTGAAGATAGAGCCGGCCGGAATTAAAGGCGGCTCTATCCCTGTATGCCCGCAAAGCAAATGCCGAAGGCAAGGG                                                                                                                                                        >  4:112909/1‑149                                                                                                                  CCTGTATGCCCGCAAAGCAAATGCCGAAGGCAAGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGGAGATACCGTAGCGGTCA                                       <  7:19097/149‑1                                                                                                                  CCTGTATGCCCGCAAAGCAAATGCCGAAGGCAAGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGGAGATACCGTAGCGGTCA                                       >  8:19097/1‑149                                                                                                                    TGTATGCCCGCAAAGCAAATGCCGAAGGCAAGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGGGCGC                                                                       <  5:228067/115‑1                                                                                                                    TGTATGCCCGCAAAGCAAATGCCGAAGGCAAGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGGGCGC                                                                       >  6:228067/1‑115                                                                                                                                                       ATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGGAGATACCGTAGCGGTCATGCAGCGTCGGCAGAGCGCCAGCATCGAGGAAGGCAT  >  1:109835/1‑149                                                                                                                                                                                                                                                                                                             ACGCTGCATGACCGCTACGGTATCTCCACCGATGCAGTGAGCGCGCAGATCAAGGCTTGGCTGTGACGTGATGCCTGAAGATAGAGCCGGCCGGAATTAAAGGCGGCTCTATCCCTGTATGCCCGCAAAGCAAATGCCGAAGGCAAGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6117369‑6117218 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcatACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGGAGATACCGTAGCGGTCATGCAGCGTCGGCAGAGCGCCAGCATCGAGGAAGGCAT  >  NC_002947/6117252‑6117398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.