New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6117218 =	46 (0.930)	4 (0.090)	4/244	NT	8.7%	intergenic (+26/+86)	lpd/PP_5367	dihydrolipoyl dehydrogenase/transketolase domain‑containing protein
	?	NC_002947	6117252 =	40 (0.850)					intergenic (+60/+52)	lpd/PP_5367	dihydrolipoyl dehydrogenase/transketolase domain‑containing protein

TGGCTATGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGGAGATACCGTAGCGGTCATGCA  >  NC_002947/6117071‑6117365                                                                                                                                                    |                                                                                                                                                    atgccttcctcgatgctggcgctctgccgacgctgcatgaccgctacggtatctccaccgatgcagtgagcgcgcagatcaaggcttggctgtgacgtgatgcctgaagatagagccggccggaattaaaggcggctctatccctgtAt                                                                                                                                                    >  1:109835‑M1/148‑149 (MQ=255)       tGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGccc                                                                                                                                                <  3:57414/147‑1 (MQ=255)         gAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGc                                                                                                                                            >  1:66222/1‑149 (MQ=255)                 ggcctcggcAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCa                                                                                                                                    >  7:43874/1‑149 (MQ=255)                 ggcctcggcAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCACGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCg                                                                                                                                       <  6:124034/146‑1 (MQ=255)                           gaagaTATCGCCCGCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCAtttgctttgc                                                                                                                          <  5:232658/149‑1 (MQ=255)                             agaTATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCgg                                                                                                                        <  1:133382/149‑1 (MQ=255)                             agaTATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCg                                                                                                                         <  8:204375/148‑1 (MQ=255)                                 atCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCa                                                                                                                     >  5:318202/1‑148 (MQ=255)                                  tCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCtt                                                                                                                                         <  2:31212/127‑1 (MQ=255)                                  tCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCtt                                                                                                                                         >  1:31212/1‑127 (MQ=255)                                  tCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCgggttgg                                                                                                                   >  4:292035/1‑145 (MQ=255)                                  tCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATa                                                                                                                   >  1:168087/1‑149 (MQ=255)                                    gCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATa                                                                                                                   >  3:112909/1‑147 (MQ=255)                                      tgaccgctacggtatctccaccgatgcagtgagcgcgcagatcaaggcttggctgtgacgtgatgcctgaagatagagccggccggaattaaaggcggctctatccctgtATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAgg                                                                                                               >  8:19097‑M1/111‑149 (MQ=255)                                      tgaccgctacggtatctccaccgatgcagtgagcgcgcagatcaaggcttggctgtgacgtgatgcctgaagatagagccggccggaattaaaggcggctctatccctgtATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAgg                                                                                                               <  7:19097‑M1/39‑1 (MQ=255)                                       cTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAgg                                                                                                               >  1:129758/1‑148 (MQ=255)                                            cTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGAGGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGa                                                                                                             >  2:118379/1‑145 (MQ=255)                                            cTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGa                                                                                                             <  1:118379/145‑1 (MQ=255)                                               ccACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGc                                                                                                                      <  2:44114/133‑1 (MQ=255)                                               ccACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGc                                                                                                                      >  1:44114/1‑133 (MQ=255)                                                   ccgcacccgACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCt                                                                                                  >  1:303644/1‑149 (MQ=255)                                                     gcacccgACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCtt                                                                                                 >  6:68930/1‑148 (MQ=255)                                                                 cTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTccggccgg                                                                                    >  6:274123/1‑149 (MQ=255)                                                                  tCCGAGGCCCTGCGCCAGGCGGCGAAGAATGTGGATGGCATGGCCATGCAAATCTGACGCGCCCCATTCGCTGCGTCAGGCCATGCCCATGCCTTCCGCATTTGCTTTGCGGGCATACAGGGAAAGAGCCGCCTTTAATTccggccgg                                                                                    >  1:272923/1‑148 (MQ=255)                                                                      gcgcccagatcaaggcttggctgtgacgtgatgcctgaagatagagccggccggaattaaaggcggctctatccctgtATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACa                                                                                                                 >  6:228067‑M1/79‑115 (MQ=255)                                                                      gcgcccagatcaaggcttggctgtgacgtgatgcctgaagatagagccggccggaattaaaggcggctctatccctgtATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACa                                                                                                                 <  5:228067‑M1/37‑1 (MQ=255)                                                                          ccTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCtt                                                                           >  6:142709/1‑149 (MQ=255)                                                                                 cAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCa                                                                     >  3:251417/1‑148 (MQ=255)                                                                                         gATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGctc                                                                                 >  7:3586/1‑128 (MQ=255)                                                                                         gATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGctc                                                                                 <  8:3586/128‑1 (MQ=255)                                                                                                gtgGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGGTTTGCGGGCTTACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCGCTATCTTCAGGCATCACGTCACCGCCAAg                                                     >  6:180309/1‑149 (MQ=255)                                                                                                 tgGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGc                                                    <  2:66222/149‑1 (MQ=255)                                                                                                    atggcatggcCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCtt                                                 <  5:68930/149‑1 (MQ=255)                                                                                                       gcatggcCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGa                                               <  5:142709/148‑1 (MQ=255)                                                                                                        catggcCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGc                                                    >  5:204908/1‑142 (MQ=255)                                                                                                        catggcCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGc                                                    <  6:204908/142‑1 (MQ=255)                                                                                                        catggcCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATc                                             >  3:190151/1‑149 (MQ=255)                                                                                                             ccATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTg                                                <  8:110688/141‑1 (MQ=255)                                                                                                             ccATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTg                                                >  7:110688/1‑141 (MQ=255)                                                                                                               aTGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGAt                                              >  6:28555/1‑141 (MQ=255)                                                                                                               aTGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGAt                                              <  5:28555/141‑1 (MQ=255)                                                                                                                tGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCt                                     >  4:83816/1‑149 (MQ=255)                                                                                                                   aaaTCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCaa                                                      >  8:7517/1‑129 (MQ=255)                                                                                                                   aaaTCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCaa                                                      <  7:7517/129‑1 (MQ=255)                                                                                                                   aaaTCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCAc                                  <  2:303644/149‑1 (MQ=255)                                                                                                                   aaaTCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCAc                                  <  8:43874/149‑1 (MQ=255)                                                                                                                            gAGCCGCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCGGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGt                         <  2:272923/149‑1 (MQ=255)                                                                                                                               ccccATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGga                      <  2:129758/149‑1 (MQ=255)                                                                                                                                  cATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGgaga                    >  4:111401/1‑148 (MQ=255)                                                                                                                                        cTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGGAGATACCg               >  1:195603/1‑147 (MQ=255)                                                                                                                                                  ccATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGGAGATACCGTAGCGGTCATGc   <  4:190151/149‑1 (MQ=255)                                                                                                                                                   cATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTTGAGATACCGTAGCGGTCATGCa  <  2:168087/149‑1 (MQ=255)                                                                                                                                                   cATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGGAGATACCGTAGCGGTCATg    >  6:34463/1‑147 (MQ=255)                                                                                                                                                   cATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGGAGATACCGTAGCGGTCATGCa  <  6:318202/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TGGCTATGGAGTTCTCGGCCTCGGCAGAAGATATCGCCCTCACCTGCCACCCGCACCCGACGCGCTCCGAGGCCCTGCGCCAGGCGGCGATGAATGTGGATGGCATGGCCATGCAAATCTGACGAGCCCCATTCGCTGCGTCAGGCCATGCCCTTGCCTTCGGCATTTGCTTTGCGGGCATACAGGGATAGAGCCGCCTTTAATTCCGGCCGGCTCTATCTTCAGGCATCACGTCACAGCCAAGCCTTGATCTGCGCGCTCACTGCATCGGTGGAGATACCGTAGCGGTCATGCA  >  NC_002947/6117071‑6117365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.