New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6178440	44 (0.890)	5 (0.110)	5/246	NT	10.8%	coding (638/1545 nt)	atpA	ATP synthase subunit alpha
	?	NC_002947	= 6178464	40 (0.840)					coding (614/1545 nt)	atpA	ATP synthase subunit alpha

ATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTTCTTCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6178292‑6178440 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccaCCGTTGCCAACATCGTTCGCAAGCTGGAAGAAAC  <  NC_002947/6178464‑6178431                                                                                                                                                                                         ATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTTCTTCCA                                    <  1:45142/149‑1                                  ggGGAAGAACTCGCCCATTGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTTCTTCCACCGTTGCCAACATCGTTCGCAAGCTGGAAGAAA   <  7:136102/147‑1                                    GGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTTCTTCCACCGTTGCCAACATCGTTCGCAAGCTGGAAGAAAC  <  3:17867/148‑1                                    GGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTTCTTCCACCGTTGCCAACATCGTTCGCAAGCTGGAAGAAAC  >  4:17867/1‑148                                                         AACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTTCTTCCAGC‑TTGCCAACATCGTTCGCAAGCT           <  3:61031/117‑1                                                         AACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTTCTTCCAGC‑TTGCCAACATCGTTCGCAAGCT           >  4:61031/1‑117                                                                                                                                                                                         ATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTTCTTCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6178292‑6178440 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccaCCGTTGCCAACATCGTTCGCAAGCTGGAAGAAAC  <  NC_002947/6178464‑6178431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.