New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6178440	44 (0.890)	5 (0.110)	5/246	NT	10.8%	coding (638/1545 nt)	atpA	ATP synthase subunit alpha
	?	NC_002947	= 6178464	40 (0.840)					coding (614/1545 nt)	atpA	ATP synthase subunit alpha

ATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGCCGATCTGACGGTCGCCAATGATCAGC  >  NC_002947/6178292‑6178580                                                                                                                                                        |                                                                                                                                             aTCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCA                                                                                                                                              <  1:45142‑M1/149‑1 (MQ=255)       aaCGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGc                                                                                                                                        <  6:314558/149‑1 (MQ=255)         cGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCg                                                                                                                                       >  2:135022/1‑148 (MQ=255)                    tCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGc                                                                                                                           <  2:195220/149‑1 (MQ=255)                         aCCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACgg                                                                                                                      >  1:151156/1‑149 (MQ=255)                                  ggggaaGAACTCGCCCATTGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAccgttgccaacatcgttcgcaagctggaagaaa                                                                                                             <  7:136102‑M1/147‑34 (MQ=255)                                   cgGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCtt                                                                                                            <  1:141553/149‑1 (MQ=255)                                    ggAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAccgttgccaacatcgttcgcaagctggaagaaac                                                                                                            >  4:17867‑M1/1‑114 (MQ=255)                                    ggAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAccgttgccaacatcgttcgcaagctggaagaaac                                                                                                            <  3:17867‑M1/148‑35 (MQ=255)                                     gaagaaCTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCt                                                                                                          <  1:135022/149‑1 (MQ=255)                                        gaaCTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGc                                                                                                       >  1:200709/1‑149 (MQ=255)                                            tCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGATTGCGAACGATGTTGGCAACGGTGGACCGCTTCTGGCCGAc                                                                                                   >  2:38870/1‑149 (MQ=255)                                              gCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTg                                                                                                 >  1:222666/1‑149 (MQ=255)                                               cccATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTTGGGGAGCCAGCTAGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGAc                                                                                                   >  1:105514/1‑149 (MQ=255)                                                 cATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCaa                                                                                              <  2:1686/149‑1 (MQ=255)                                                 cATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCaa                                                                                              <  6:14320/149‑1 (MQ=255)                                                         aaCCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAgcttgccaacatcgttcgcaagct                                                                                                                      >  4:61031‑M1/1‑93 (MQ=255)                                                         aaCCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAgcttgccaacatcgttcgcaagct                                                                                                                      <  3:61031‑M1/117‑25 (MQ=255)                                                         aaCCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAaca                                                                                      >  7:190243/1‑149 (MQ=255)                                                         aaCCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAaca                                                                                      >  7:100061/1‑149 (MQ=255)                                                           ccGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTg                                                                                                                                         <  1:92739/96‑1 (MQ=255)                                                           ccGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTg                                                                                                                                         >  2:92739/1‑96 (MQ=255)                                                             ggCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGa                                                                                  <  6:300343/149‑1 (MQ=255)                                                                gTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGaaaa                                                                               <  8:183540/149‑1 (MQ=255)                                                                     gcgcCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCg                                                                          <  2:222666/149‑1 (MQ=255)                                                                     gcgcCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCg                                                                          <  5:294339/149‑1 (MQ=255)                                                                     gcgcCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCg                                                                          <  1:49898/149‑1 (MQ=255)                                                                       gcCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGa                                                                        <  8:100061/149‑1 (MQ=255)                                                                           ggAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCACCGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACAGGAGTCt                                                                    >  7:289176/1‑149 (MQ=255)                                                                           ggAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGaa                                                                                 >  4:119182/1‑136 (MQ=255)                                                                           ggAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGaa                                                                                 <  3:119182/136‑1 (MQ=255)                                                                              aTTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTc                                                                 <  2:151156/149‑1 (MQ=255)                                                                                    gTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGtt                                                            >  4:89815/1‑148 (MQ=255)                                                                                         gcggATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTgatgat                                                      >  4:206499/1‑149 (MQ=255)                                                                                          cggATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGatgatg                                                     <  8:190243/149‑1 (MQ=255)                                                                                                  gAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAAc                                                                                                                        >  5:268519/1‑74 (MQ=255)                                                                                                  gAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAAc                                                                                                                        <  6:268519/74‑1 (MQ=255)                                                                                                  gAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGAt                                             >  5:66956/1‑149 (MQ=255)                                                                                                     gCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAAc                                                                                             <  5:146100/98‑1 (MQ=255)                                                                                                     gCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAAc                                                                                             >  6:146100/1‑98 (MQ=255)                                                                                                         tGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATg                                            <  5:210623/143‑1 (MQ=255)                                                                                                         tGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATg                                            >  6:210623/1‑143 (MQ=255)                                                                                                                aacCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCa                                                                                               >  2:214419/1‑85 (MQ=255)                                                                                                                aacCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCa                                                                                               <  1:214419/85‑1 (MQ=255)                                                                                                                      gATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGCCGa                         <  2:105514/149‑1 (MQ=255)                                                                                                                       aTGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGCCGAt                        <  7:188199/149‑1 (MQ=255)                                                                                                                        tGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGCCGATc                       <  3:206499/149‑1 (MQ=255)                                                                                                                            gtTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGc                            <  3:228768/140‑1 (MQ=255)                                                                                                                            gtTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGc                            >  4:228768/1‑140 (MQ=255)                                                                                                                                gCCAGGGCGCGGGTTT‑‑‑CTTCCAAATTGCGAACGATGTTGCCAACGGTGGAACGCATCAGGCCGAATGCAACATAAACACAGAAAATACAGGAGTCTTTCTGGTTGATGATGGCGTCTATGGCCATGGAGGTATTGCCGATCTGACGTTc               >  7:46769/1‑149 (MQ=255)                                                                                                                                 ccAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCTTGGATGGCCATGGCGTACTTGCCGATCTgacggacg              >  3:33757/1‑149 (MQ=255)                                                                                                                                          ctgTTT‑‑‑CTTGCATGTTGCGAACGATGTTGGCATCGGTGGAACTCTTCTGGCCGACTGGAACATAAACTCTGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGCCGATCTGACGGTCGCCAATGATc     <  8:289176/147‑1 (MQ=255)                                                                                                                                            gTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGtggaagaaaccggcgccctggccaacaccatcgtggttgttgccagtgcttcggaatccgccgcactgcaattcctggcgccatacgccggttgcaccatgggcgagttcttcc    >  4:17867‑M2/1‑34 (MQ=255)                                                                                                                                            gTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGtggaagaaaccggcgccctggccaacaccatcgtggttgttgccagtgcttcggaatccgccgcactgcaattcctggcgccatacgccggttgcaccatgggcgagttcttcc    <  3:17867‑M2/148‑115 (MQ=255)                                                                                                                                             ttt‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGtggaagaaaccggcgccctggccaacaccatcgtggttgttgccagtgcttcggaatccgccgcactgcaattcctggcgccatacgccggttgcacaatgggcgagttcttcccc  <  7:136102‑M2/149‑117 (MQ=255)                                                                                                                                                        aGCTTGCGAACGATGTTGGCAA‑GCtggaagaaaccggcgccctggccaacaccatcgtggttgttgccagtgcttcggaatccgccgcactgcaattcctggcgccatacgccggtt                         >  4:61031‑M2/1‑24 (MQ=255)                                                                                                                                                        aGCTTGCGAACGATGTTGGCAA‑GCtggaagaaaccggcgccctggccaacaccatcgtggttgttgccagtgcttcggaatccgccgcactgcaattcctggcgccatacgccggtt                         <  3:61031‑M2/117‑94 (MQ=255)                                                                                                                                                        |                                                                                                                                             ATCGTAAACGATCAGTGCGTCTTCACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGCCGATCTGACGGTCGCCAATGATCAGC  >  NC_002947/6178292‑6178580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.