New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6178440	44 (0.890)	5 (0.110)	5/246	NT	10.8%	coding (638/1545 nt)	atpA	ATP synthase subunit alpha
	?	NC_002947	= 6178464	40 (0.840)					coding (614/1545 nt)	atpA	ATP synthase subunit alpha

ACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGCCGATCTGACGGTCGCCAATGATCAGCTCACGCTGGCCACGGCCGACAGGGATCATG  >  NC_002947/6178316‑6178610                                                                                                                                                        |                                                                                                                                                   aCCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACgg                                                                                                                                                    >  1:151156/1‑149 (MQ=255)           cgGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCtt                                                                                                                                          <  1:141553/149‑1 (MQ=255)             gaagaaCTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCt                                                                                                                                        <  1:135022/149‑1 (MQ=255)                gaaCTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGc                                                                                                                                     >  1:200709/1‑149 (MQ=255)                    tCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGATTGCGAACGATGTTGGCAACGGTGGACCGCTTCTGGCCGAc                                                                                                                                 >  2:38870/1‑149 (MQ=255)                      gCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTg                                                                                                                               >  1:222666/1‑149 (MQ=255)                       cccATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTTGGGGAGCCAGCTAGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGAc                                                                                                                                 >  1:105514/1‑149 (MQ=255)                         cATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCaa                                                                                                                            <  6:14320/149‑1 (MQ=255)                         cATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCaa                                                                                                                            <  2:1686/149‑1 (MQ=255)                                 aaCCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAaca                                                                                                                    >  7:100061/1‑149 (MQ=255)                                 aaCCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAaca                                                                                                                    >  7:190243/1‑149 (MQ=255)                                     ggCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGa                                                                                                                <  6:300343/149‑1 (MQ=255)                                        gTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGaaaa                                                                                                             <  8:183540/149‑1 (MQ=255)                                             gcgcCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCg                                                                                                        <  2:222666/149‑1 (MQ=255)                                             gcgcCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCg                                                                                                        <  5:294339/149‑1 (MQ=255)                                             gcgcCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCg                                                                                                        <  1:49898/149‑1 (MQ=255)                                               gcCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGa                                                                                                      <  8:100061/149‑1 (MQ=255)                                                   ggAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCACCGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACAGGAGTCt                                                                                                  >  7:289176/1‑149 (MQ=255)                                                   ggAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGaa                                                                                                               <  3:119182/136‑1 (MQ=255)                                                   ggAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGaa                                                                                                               >  4:119182/1‑136 (MQ=255)                                                      aTTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTc                                                                                               <  2:151156/149‑1 (MQ=255)                                                            gTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGtt                                                                                          >  4:89815/1‑148 (MQ=255)                                                                 gcggATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTgatgat                                                                                    >  4:206499/1‑149 (MQ=255)                                                                  cggATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGatgatg                                                                                   <  8:190243/149‑1 (MQ=255)                                                                          gAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGAt                                                                           >  5:66956/1‑149 (MQ=255)                                                                             gCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAAc                                                                                                                           >  6:146100/1‑98 (MQ=255)                                                                             gCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAAc                                                                                                                           <  5:146100/98‑1 (MQ=255)                                                                                 tGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATg                                                                          >  6:210623/1‑143 (MQ=255)                                                                                 tGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATg                                                                          <  5:210623/143‑1 (MQ=255)                                                                                        aacCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCa                                                                                                                             <  1:214419/85‑1 (MQ=255)                                                                                        aacCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCa                                                                                                                             >  2:214419/1‑85 (MQ=255)                                                                                              gATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGCCGa                                                       <  2:105514/149‑1 (MQ=255)                                                                                               aTGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGCCGAt                                                      <  7:188199/149‑1 (MQ=255)                                                                                                tGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGCCGATc                                                     <  3:206499/149‑1 (MQ=255)                                                                                                    gtTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGc                                                          >  4:228768/1‑140 (MQ=255)                                                                                                    gtTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGc                                                          <  3:228768/140‑1 (MQ=255)                                                                                                        gCCAGGGCGCGGGTTT‑‑‑CTTCCAAATTGCGAACGATGTTGCCAACGGTGGAACGCATCAGGCCGAATGCAACATAAACACAGAAAATACAGGAGTCTTTCTGGTTGATGATGGCGTCTATGGCCATGGAGGTATTGCCGATCTGACGTTc                                             >  7:46769/1‑149 (MQ=255)                                                                                                         ccAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCTTGGATGGCCATGGCGTACTTGCCGATCTgacggacg                                            >  3:33757/1‑149 (MQ=255)                                                                                                                  ctgTTT‑‑‑CTTGCATGTTGCGAACGATGTTGGCATCGGTGGAACTCTTCTGGCCGACTGGAACATAAACTCTGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGCCGATCTGACGGTCGCCAATGATc                                   <  8:289176/147‑1 (MQ=255)                                                                                                                    gTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGtggaagaaaccggcgccctggccaacaccatcgtggttgttgccagtgcttcggaatccgccgcactgcaattcctggcgccatacgccggttgcaccatgggcgagttcttcc                                  >  4:17867‑M2/1‑34 (MQ=255)                                                                                                                    gTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGtggaagaaaccggcgccctggccaacaccatcgtggttgttgccagtgcttcggaatccgccgcactgcaattcctggcgccatacgccggttgcaccatgggcgagttcttcc                                  <  3:17867‑M2/148‑115 (MQ=255)                                                                                                                     ttt‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGtggaagaaaccggcgccctggccaacaccatcgtggttgttgccagtgcttcggaatccgccgcactgcaattcctggcgccatacgccggttgcacaatgggcgagttcttcccc                                <  7:136102‑M2/149‑117 (MQ=255)                                                                                                                                aGCTTGCGAACGATGTTGGCAA‑GCtggaagaaaccggcgccctggccaacaccatcgtggttgttgccagtgcttcggaatccgccgcactgcaattcctggcgccatacgccggtt                                                       >  4:61031‑M2/1‑24 (MQ=255)                                                                                                                                aGCTTGCGAACGATGTTGGCAA‑GCtggaagaaaccggcgccctggccaacaccatcgtggttgttgccagtgcttcggaatccgccgcactgcaattcctggcgccatacgccggtt                                                       <  3:61031‑M2/117‑94 (MQ=255)                                                                                                                                       gAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGCCGATCTGACGGTCGCCAATGATCAGCTCACGCTGGCCACgg                 >  2:269731/1‑149 (MQ=255)                                                                                                                                                 ggCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGCCGATCTGACGGTCGCCAATGATCAGCTCACGCTGGCCACGGCCGACAggg        <  3:89815/148‑1 (MQ=255)                                                                                                                                                   cAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGCCGATCTGACGGTCGCCAATGATCAGCTCACGCTGGCCACGGCCGACAGGGAt      >  6:190385/1‑148 (MQ=255)                                                                                                                                                    aaCGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGCCGATCTGACGGTCGCCAATGATCAGCTCACGCTGGCCACGGCAGACAGGGATCa    >  4:178647/1‑149 (MQ=255)                                                                                                                                                      cGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGCCGATCTGACGGTCGCCAATGATCAGCTCACGCTGGCCACGGCCGACAGGGATCATg  <  2:200709/149‑1 (MQ=255)                                                                                                                                                        |                                                                                                                                                   ACCGCGGTCGCGGAAGAACTCGCCCATGGTGCAACCGGCGTATGGCGCCAGGAATTGCAGTGCGGCGGATTCCGAAGCACTGGCAACAACCACGATGGTGTTGGCCAGGGCGCCGGTTT‑‑‑CTTCCAGCTTGCGAACGATGTTGGCAACGGTGGAACGCTTCTGGCCGACTGCAACATAAACACAGAAAATACCGGAGTCTTTCTGGTTGATGATGGCGTCGATGGCCATGGCGGTCTTGCCGATCTGACGGTCGCCAATGATCAGCTCACGCTGGCCACGGCCGACAGGGATCATG  >  NC_002947/6178316‑6178610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.