New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 615213	46 (0.930)	3 (0.060)	3/240	NT	6.2%	coding (34/888 nt)	ispA	farnesyl diphosphate synthase
	?	NC_002947	= 615257	48 (1.040)					coding (229/243 nt)	xseB	exodeoxyribonuclease 7 small subunit

GGGCGCCCAAGGCTTCGCAGGCCGCGTAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGA  >  NC_002947/615066‑615361                                                                                                                                                      |                                                                                                                                                      gggCGCCCAAGGCTTCGCAGGCCGCGTAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGAcgcgc                                                                                                                                                      <  7:30636/149‑1 (MQ=255)      cccAAGGCTTCGCAGGCCGCGTAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTg                                                                                                                                                 >  5:221554/1‑149 (MQ=255)       ccAAGGCTTCGCAGGCCGCGTAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTgg                                                                                                                                                <  5:269687/149‑1 (MQ=255)       ccAAGGCTTCGCAGGCCGCGTAGGCCAGCAACGGGCGCACGCGTTTGACGCCCTTCATCACGC‑TGTAGAGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGATCGGGGCGATGAACAGCGGTGCG‑AGGGCTGCGTCGACGCGCGCCTgg                                                                                                                                                >  8:125437/1‑149 (MQ=255)            gCTTCGCAGGGCGCGTAGGCCAGGAACGGGCGCAAGCGTTTGCCGCCGTTCATCACGG‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATTAACAGCGGTTCGAAGGGCTGCGTCGACGCGCGCCTGGCAAc                                                                                                                                            <  1:14633/149‑1 (MQ=255)            gCTTCGCAGGCCGCGTAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCTCCTGGCAAc                                                                                                                                            >  2:14633/1‑148 (MQ=255)                 gCAGGCCGCGTAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTGCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCt                                                                                                                                      <  8:46313/149‑1 (MQ=255)                  cAGGCCGCGTAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTg                                                                                                                                     <  7:94596/149‑1 (MQ=255)                   aGGCCGCGTAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTg                                                                                                                                     <  8:57515/148‑1 (MQ=255)                   aGGCCGCGTAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTg                                                                                                                                     >  7:57515/1‑148 (MQ=255)                     gCCGCGTAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTgg                                                                                                                                    >  3:163950/1‑147 (MQ=255)                     gCCGCGTAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTa                                                                                                                                  <  8:239753/149‑1 (MQ=255)                       cgcgTAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAgg                                                                                                                                >  8:216596/1‑149 (MQ=255)                         cgTAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCGTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGt                                                                                                                               >  1:224490/1‑149 (MQ=255)                               ccAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATc                                                                                                                        <  7:242039/149‑1 (MQ=255)                                    aaCGGGCGCACGCGTTTGCCGCCGTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGgagccggaagcatgattggcacctaccaggccagtt                                                                                                                   >  3:139395‑M1/1‑113 (MQ=255)                                    aaCGGGCGCACGCGTTTGCCGCCGTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCt                                                                                                                   >  3:262714/1‑149 (MQ=255)                                                     gccgccGTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGgagccggaagcatgattggcacctaccaggccagttgccaggcgcgcgtcga                                                                                                   <  4:139395‑M1/148‑53 (MQ=255)                                                      ccgccgTTCATCACGC‑TGTAGCGCATGGCTGCGTAAAGGCGTTCCAGCTCTTTGCTCGGTGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGtagccggaagcatgattggcacctaccaggccagttgccaggcgcgcgtcgac                                                                                                  <  3:173207‑M1/148‑54 (MQ=255)                                                       cgccgTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAgg                                                                                               <  8:341/149‑1 (MQ=255)                                                              catcaCGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTggg                                                                                         >  2:101750/1‑148 (MQ=255)                                                                tcaCGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAg                                                                                      >  4:7274/1‑149 (MQ=255)                                                                 caCGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGc                                                                                     >  4:6344/1‑149 (MQ=255)                                                                    gC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAg                                                                                  >  3:140916/1‑149 (MQ=255)                                                                       tGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGtt                                                                                >  4:119972/1‑149 (MQ=255)                                                                                    ggcgTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTc                                                                   <  2:224490/149‑1 (MQ=255)                                                                                     gcgTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTg                                                                                                                              >  7:42069/1‑90 (MQ=255)                                                                                     gcgTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTg                                                                                                                              <  8:42069/90‑1 (MQ=255)                                                                                        tAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCcag                                                                >  6:233017/1‑148 (MQ=255)                                                                                          aaGGCGTTCCAGGTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGGTCGCCGTCGCGCTCcagca                                                              <  3:7274/148‑1 (MQ=255)                                                                                                  ccAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGc                                                      <  4:210920/148‑1 (MQ=255)                                                                                                   cAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCAc                                                    <  1:3391/149‑1 (MQ=255)                                                                                                    aGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCAcc                                                   >  8:180842/1‑149 (MQ=255)                                                                                                    aGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCAcc                                                   <  3:119972/149‑1 (MQ=255)                                                                                                         tttGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAAtt                                                         <  8:163127/138‑1 (MQ=255)                                                                                                         tttGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAAtt                                                         >  7:163127/1‑138 (MQ=255)                                                                                                                gtggCGATGAACAGCGGTTCG‑AGGTCTTCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑TGCTCCGCGTCGAAGTGTTTTGCAGCCAGTTCGCCGTCTCGCTCCAGCAGAATTTGCACCTTCTGTTCg                                          <  7:125437/144‑1 (MQ=255)                                                                                                                  ggCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTg                                     >  8:41119/1‑149 (MQ=255)                                                                                                                   gCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTgg                                    <  7:180842/149‑1 (MQ=255)                                                                                                                     gATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTg                                              >  8:82496/1‑137 (MQ=255)                                                                                                                     gATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTg                                              <  7:82496/137‑1 (MQ=255)                                                                                                                       tGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGc                                  >  7:4714/1‑147 (MQ=255)                                                                                                                        gAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAg                               >  2:158700/1‑149 (MQ=255)                                                                                                                         aaCAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGGGCCAATCATGCTTCC‑GGCTCCGCGTCGATGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAg                               <  4:163950/148‑1 (MQ=255)                                                                                                                              cGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGcc                         <  4:262714/149‑1 (MQ=255)                                                                                                                                    g‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTgg                     >  4:231091/1‑147 (MQ=255)                                                                                                                                          gttcttCGCCGCGCGCCTGGCCACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCAc              <  6:221554/144‑1 (MQ=255)                                                                                                                                            gCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACgg            >  5:173245/1‑149 (MQ=255)                                                                                                                                              gTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCCGGGGTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCGGGCCGTCACggg           >  1:233309/1‑149 (MQ=255)                                                                                                                                              gTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTAcgcgtcgacgcagccctcgaaccgctgttcatcgcaccgagcaaagagctggaacgcctttacgcagccatgcgctacagcgtgatgaacggcgg           <  3:173207‑M2/148‑96 (MQ=255)                                                                                                                                               tCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCcgcgtcgacgcagccctcgaaccgctgttcatcgccccgagcaaagagctggaacgcctttacgccgccatgcgctacagcgtgatgaacggcggc          <  4:139395‑M2/148‑97 (MQ=255)                                                                                                                                               tCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGt          >  7:287728/1‑148 (MQ=255)                                                                                                                                                   cgcgcgCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAggc     <  7:216596/149‑2 (MQ=255)                                                                                                                                                      gcgcCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGa  <  6:173245/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GGGCGCCCAAGGCTTCGCAGGCCGCGTAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGC‑TGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCG‑AGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGA  >  NC_002947/615066‑615361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.