New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 615213	46 (0.930)	3 (0.060)	3/240	NT	6.2%	coding (34/888 nt)	ispA	farnesyl diphosphate synthase
	?	NC_002947	= 615257	48 (1.040)					coding (229/243 nt)	xseB	exodeoxyribonuclease 7 small subunit

CGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGATGCCTTGTTCAAAGGCGGCCAGCGACTCTTCCAGCGA  >  NC_002947/615120‑615398                                                                                                                                           |                                                                                                                                                 cgccgTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAgg                                                                                                                                       <  8:341/149‑1 (MQ=255)        catcaCGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTggg                                                                                                                                 >  2:101750/1‑148 (MQ=255)          tcaCGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAg                                                                                                                              >  4:7274/1‑149 (MQ=255)           caCGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGc                                                                                                                             >  4:6344/1‑149 (MQ=255)              gCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAg                                                                                                                          >  3:140916/1‑149 (MQ=255)                tGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGtt                                                                                                                        >  4:119972/1‑149 (MQ=255)                             ggcgTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTc                                                                                                        <  2:224490/149‑1 (MQ=255)                                 tAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCcag                                                                                                     >  6:233017/1‑148 (MQ=255)                                   aaGGCGTTCCAGGTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGGTCGCC‑‑‑GTCGCGCTCcagca                                                                                                   <  3:7274/148‑1 (MQ=255)                                           ccAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGc                                                                                           <  4:210920/148‑1 (MQ=255)                                            cAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCAc                                                                                         <  1:3391/149‑1 (MQ=255)                                             aGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCAcc                                                                                        >  8:180842/1‑149 (MQ=255)                                             aGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCAcc                                                                                        <  3:119972/149‑1 (MQ=255)                                                  tttGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAAtt                                                                                              <  8:163127/138‑1 (MQ=255)                                                  tttGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAAtt                                                                                              >  7:163127/1‑138 (MQ=255)                                                         gtggCGATGAACAGCGGTTCGAGGTCTTCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑TGCTCCGCGTCGAAGTGTTTTGCAGCCAGTTCGCC‑‑‑GTCTCGCTCCAGCAGAATTTGCACCTTCTGTTCg                                                                               <  7:125437/144‑1 (MQ=255)                                                           ggCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTg                                                                          >  8:41119/1‑149 (MQ=255)                                                            gCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTgg                                                                         <  7:180842/149‑1 (MQ=255)                                                              gATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTg                                                                                   >  8:82496/1‑137 (MQ=255)                                                              gATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTg                                                                                   <  7:82496/137‑1 (MQ=255)                                                                tGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGc                                                                       >  7:4714/1‑147 (MQ=255)                                                                 gAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAg                                                                    >  2:158700/1‑149 (MQ=255)                                                                  aaCAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGGGCCAATCATGCTTCC‑GGCTCCGCGTCGATGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAg                                                                    <  4:163950/148‑1 (MQ=255)                                                                       cGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGcc                                                              <  4:262714/149‑1 (MQ=255)                                                                             gAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTgg                                                          >  4:231091/1‑147 (MQ=255)                                                                                  gttcttCGCCGCGCGCCTGGCCACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCAc                                                   <  6:221554/144‑1 (MQ=255)                                                                                    gCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACgg                                                 >  5:173245/1‑149 (MQ=255)                                                                                      gTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCCGGGGTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCGGGCCGTCACggg                                                >  1:233309/1‑149 (MQ=255)                                                                                      gTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTAcgcgtcgacgcagccctcgaaccgctgttcatcgcaccgagcaaagagctggaacgcctttacgcagccatgcgctacagcgtgatgaacggcgg                                                   <  3:173207‑M2/148‑96 (MQ=255)                                                                                       tCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCcgcgtcgacgcagccctcgaaccgctgttcatcgccccgagcaaagagctggaacgcctttacgccgccatgcgctacagcgtgatgaacggcggc                                                  <  4:139395‑M2/148‑97 (MQ=255)                                                                                       tCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGt                                               >  7:287728/1‑148 (MQ=255)                                                                                           cgcgcgCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAggc                                          <  7:216596/149‑2 (MQ=255)                                                                                              gcgcCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGa                                       <  6:173245/149‑1 (MQ=255)                                                                                                 ccTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGATGc                                    <  7:41119/149‑1 (MQ=255)                                                                                                       aaCTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCcgcgtcgacgcagccctcgaaccgctgttcatcgccccgagcaaagagctggaacgcctttacgccgccatgcgctacagcgtgatgaacggcggcaaacgcgtgcgcccgtt                                 >  3:139395‑M2/1‑36 (MQ=255)                                                                                                         cTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGATGCCTTGt                               >  4:259104/1‑146 (MQ=255)                                                                                                         cTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGATGCCTTGt                               <  3:259104/146‑1 (MQ=255)                                                                                                            gCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGATGCCTTGTTCaaa                          <  3:231091/148‑1 (MQ=255)                                                                                                            gCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGATGCCTTGTTCAAAg                         >  2:130949/1‑149 (MQ=255)                                                                                                                    ggTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCACTGTCGGTCCCCATATCAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGATGCCTTGTTCAAAggcgg                     <  1:101750/148‑1 (MQ=255)                                                                                                                      tGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGATGCCTTg                                >  4:74366/1‑132 (MQ=255)                                                                                                                      tGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGATGCCTTg                                <  3:74366/132‑1 (MQ=255)                                                                                                                       gCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTggg                                                                        >  6:123994/1‑91 (MQ=255)                                                                                                                       gCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTggg                                                                        <  5:123994/91‑1 (MQ=255)                                                                                                                         cAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAg                                                       <  4:169695/106‑1 (MQ=255)                                                                                                                         cAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAg                                                       >  3:169695/1‑106 (MQ=255)                                                                                                                            tCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGGCAGGGCGATGCCTTGTTCAAAGGCGGCCAGCGACTCtt         <  1:130949/149‑1 (MQ=255)                                                                                                                               tGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGATg                                     <  7:249434/118‑1 (MQ=255)                                                                                                                               tGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGATg                                     >  8:249434/1‑118 (MQ=255)                                                                                                                                gCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGATGCCTTGTTCAAAGGCGGCCAGCGACTCTTCCAg     >  3:127294/1‑149 (MQ=255)                                                                                                                                 cTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGATGCCTTGTTCAAAGGCGGCCAGCGACTCTTCCAGc    <  2:233309/149‑1 (MQ=255)                                                                                                                                    cc‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGATGCCTTGTTCAAAGGCGGCCAGCGACTCTTCCAGCGa  <  4:140916/148‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                 CGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCC‑GGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCC‑‑‑GTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCAGTCACGGGTCAGGGCGATGCCTTGTTCAAAGGCGGCCAGCGACTCTTCCAGCGA  >  NC_002947/615120‑615398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.