New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	958380 =	37 (0.750)	4 (0.090)	4/230	NT	11.4%	intergenic (+27/‑166)	ykgJ/PP_0820	ferredoxin/acetyltransferase
	?	NC_002947	958419 =	29 (0.650)					intergenic (+66/‑127)	ykgJ/PP_0820	ferredoxin/acetyltransferase

GGAGGGTGGGGTGCATAACCCGAGCTGTGATGATGCGCGGGCGGCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAA  >  NC_002947/958233‑958528                                                                                                                                                    |                                                                                                                                                     ggAGGGTGGGGTGCATAACCCGAGCTGTGATGATGCGCGGGCGGCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAAtg                                                                                                                                                     <  6:244490/149‑1 (MQ=255) aaactgcggggtggggtcacgccggatctcctgtccattgctggggagatgacagtttaacgtcaagtgcagggttcaggcatctcgggcagctttgcatcccgtcgccggcaggttcaccacaggccaggagccttgcacgctacctg                                                                                                                                                     <  4:157889‑M1/2‑1 (MQ=255)  gAGGGTGGGGTGCATAACCCGAGCTGTGATGATGCGCGGGCGGCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAAtgt                                                                                                                                                    <  5:121431/149‑1 (MQ=255)  gAGGGTGGGGTGCATAACCCGAGCTGTGATGATGCGCGGGCGGCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAAtgt                                                                                                                                                    <  3:70708/149‑1 (MQ=255)    ctgcggggtggggtcacgccggatctcctgtccattgctggggagatgacagtttaacgtcaagtgcagggttcaggcatctcgggcagctttgcagcccgtcgccggcaggttcaccacaggccaggagccttgcacgctaccTGTgg                                                                                                                                                  >  8:27874‑M1/145‑149 (MQ=255)     ggtggggtgCATAACCCGAGCTGTGATGATGCGCGGGCGGCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGTTGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGa                                                                                                                                                 <  7:119922/149‑1 (MQ=255)      gtggggtgCATAACCCGAGCTGTGATGATGCGCGGGCGGCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAAtgt                                                                                                                                                    <  4:289574/145‑1 (MQ=255)      gtggggtgCATAACCCGAGCTGTGATGATGCGCGGGCGGCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAAtgt                                                                                                                                                    >  3:289574/1‑145 (MQ=255)        ggggtggggtcacgccggatctcctgtccattgctggggagatgacagtttaacgtcaagtgcagggttcaggcatctcgggcagctttgcagcccgtcgccggcaggttcaccacaggccaggagccttgcacgctaccTGTGGAAGc                                                                                                                                              >  3:288196‑M1/141‑149 (MQ=255)                tAACCCGAGCTGTGATGATGCGCGGGCGGCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCtttt                                                                                                                                      <  5:165261/149‑1 (MQ=255)                 aaCCCGAGCTGTGATGATGCGCGGGCGGCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTg                                                                                                                                     >  8:206865/1‑149 (MQ=255)                    ccGAGCTGTGATGATGCGCGGGGGGCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGa                                                                                                                                  >  7:198878/1‑149 (MQ=255)                      ccggatctcctgtccattgctggggagatgacagtttaacgtcaagtgcagggttcaggcatctcgggcagctttgcagcccgtcgccggcaggttcaccacaggccaggagccttgcacgctaccTGTgg                                                                                                                                                  >  5:111923‑M1/127‑131 (MQ=255)                      ccggatctcctgtccattgctggggagatgacagtttaacgtcaagtgcagggttcaggcatctcgggcagctttgcagcccgtcgccggcaggttcaccacaggccaggagccttgcacgctaccTGTgg                                                                                                                                                  <  6:111923‑M1/5‑1 (MQ=255)                         cTGTGATGATGCGCGGGCGGCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCgg                                                                                                                             >  6:165035/1‑149 (MQ=255)                            tgatgaTGCGCGGGCGGCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGTGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGc                                                                                                                          >  8:3701/1‑149 (MQ=255)                             tcctgtccattgctggggagatgacagtttaacgtcaagtgcagggttcaggcatctcgggcagctttgcagcccgtcgccggcaggttcaccacaggccaggagccttgcacgctacct                                                                                                                                                      <  1:174774‑M1/1‑1 (MQ=255)                             tcctgtccattgctggggagatgacagtttaacgtcaagtgcagggttcaggcatctcgggcagctttgcagcccgtcgccggcaggttcaccacaggccaggagccttgcacgctacct                                                                                                                                                      >  2:174774‑M1/120‑120 (MQ=255)                              atgatgCGCGGGCGGCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGcc                                                                                                                         <  7:299291/148‑1 (MQ=255)                                tgtccattgctggggagatgatagtttaacgtcaagtgcagggttcaggcatctcgggcagctttgcagcccgtcgccggcaggttcaccacaggccaggagccttgcacgctacctgtg                                                                                                                                                   <  4:137037‑M1/4‑1 (MQ=255)                                 atgCGCGGGCGGCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCt                                                                                                                      <  2:271192/148‑1 (MQ=255)                                     gcgggcggCGTATGGTTTGCCGGCGCTGAACCCGCCAGAGGCCTACGATCCGCTTTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCcac                                                                                                                 <  8:887/149‑1 (MQ=255)                                     gcgggcggCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCca                                                                                                                  >  5:33388/1‑148 (MQ=255)                                       ggggggCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAg                                                                                                               <  8:198878/149‑1 (MQ=255)                                                  ggTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTgg                                                                                                                                                  >  2:3929/1‑103 (MQ=255)                                                   gTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCaa                                                                                                    <  1:171594/148‑1 (MQ=255)                                                   gTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCaa                                                                                                    <  2:182535/148‑1 (MQ=255)                                                    tttGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAgg                                                                                                  <  5:165035/149‑1 (MQ=255)                                                          gccgcTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTg                                                                                            <  5:258413/149‑1 (MQ=255)                                                                  ccccGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTgtgg                                                                                    >  8:98272/1‑149 (MQ=255)                                                                   cccGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTgtggt                                                                                   >  3:202882/1‑149 (MQ=255)                                                                    tgcagggttcaggcatctcgggcagctttgcagcccgtcgccggcaggttcaccacaggccaggagccttgcacgctaccTGTGGAAGCGGCCTTTTGCGACGGGGGGCCGCTTCca                                                                                                                  <  5:253204‑M1/37‑1 (MQ=255)                                                                    tgcagggttcaggcatctcgggcagctttgcagcccgtcgccggcaggttcaccacaggccaggagccttgcacgctaccTGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCca                                                                                                                  >  6:253204‑M1/81‑117 (MQ=255)                                                                             gCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCg                                                                         >  6:132393/1‑149 (MQ=255)                                                                                  cGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCg                                                                                                         >  1:132625/1‑112 (MQ=255)                                                                                  cGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCg                                                                                                         <  2:132625/112‑1 (MQ=255)                                                                                     gCCGGATTGGCCGGATGAAGGGGCTGAGGTGGCCAGAAGTATCGATCAGTCTGACGTGCTCAAAGTGGAAGCGGCCTTTTGCGAcgccg                                                                                                                             >  2:32191/1‑87 (MQ=255)                                                                                       cGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCt                                                               <  6:33388/149‑1 (MQ=255)                                                                                        gCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTg                                                              >  3:120928/1‑149 (MQ=255)                                                                                         cATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTgtggt                                                                                   <  2:188508/127‑1 (MQ=255)                                                                                         cATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTgtggt                                                                                   >  1:188508/1‑127 (MQ=255)                                                                                             ctttgcagcccgtcgccggcaggttcaccacaggccaggagccttgcacgctaccTGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTc                                                                                                                    <  6:232229‑M1/35‑1 (MQ=255)                                                                                             ctttgcagcccgtcgccggcaggttcaccacaggccaggagccttgcacgctaccTGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTc                                                                                                                    >  5:232229‑M1/56‑90 (MQ=255)                                                                                                   atgatgGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGccc                                                   <  4:202882/149‑1 (MQ=255)                                                                                                      atgGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCga                                                 <  4:120928/148‑1 (MQ=255)                                                                                                         tggCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGAt                                              <  7:3701/147‑1 (MQ=255)                                                                                                               aGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGaa                                       <  7:206865/149‑1 (MQ=255)                                                                                                                       tGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCAc                               >  3:157889/1‑149 (MQ=255)                                                                                                                         aaGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTg                                  >  2:296341/1‑144 (MQ=255)                                                                                                                         aaGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTg                                  <  1:296341/144‑1 (MQ=255)                                                                                                                         aaGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACtt                             <  5:132393/149‑1 (MQ=255)                                                                                                                                    aGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGCCGACGGGATGCAAAGCTGCCCGAGATGCATGAACCCTGAACTTGACGTTAAACt                  >  4:233337/1‑149 (MQ=255)                                                                                                                                     gTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGAc                          >  4:54573/1‑140 (MQ=255)                                                                                                                                     gTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGAc                          <  3:54573/140‑1 (MQ=255)                                                                                                                                            gTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCAtctc          <  7:98272/149‑1 (MQ=255)                                                                                                                                               gTCAATGTGGAAGCGGCCTTTTGTGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTccc        >  7:62480/1‑148 (MQ=255)                                                                                                                                                  aaTGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAg     >  6:287851/1‑148 (MQ=255)                                                                                                                                                    TGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCaa  >  5:287851‑M1/1‑149 (MQ=255)                                                                                                                                                    TGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCaa  <  5:186611‑M1/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GGAGGGTGGGGTGCATAACCCGAGCTGTGATGATGCGCGGGCGGCGTATGGTTTGCCGCCGCTGACCCCGCCAGAGGCCAACGAGCCGCATTGGCCGGATGATGGGGCTGAGGTGGCCTGAAGTATCGATCAGTCTGACGTGGTCAATGTGGAAGCGGCCTTTTGCGACGCGGGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAA  >  NC_002947/958233‑958528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.